RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ZNF729A6NN14 1252 aaPredicted RBP12.13□□□□□ -0.47
VPS39-210ENST00000568357 TSPAN9O75954 239 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 VHLP40337 213 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 KCNJ3P48549 501 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 KRTAP10-3P60369 221 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 GPR176Q14439 515 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 FAM189A2Q15884 450 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 ATAD3CQ5T2N8 411 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 MINOS1Q5TGZ0 78 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 AWAT2Q6E213 333 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 OR52W1Q6IF63 320 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 TMEM91Q6ZNR0 172 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 LINC00596Q86U02 117 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 TMEM104Q8NE00 496 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 WFDC12Q8WWY7 111 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 THRSPQ92748 146 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 UFD1Q92890 307 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 FOXRED1Q96CU9 486 aaPredicted RBP12.13□□□□□ -0.47
VPS39-210ENST00000568357 BANF2Q9H503 90 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 C16orf95Q9H693 158 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 ZNF286AQ9HBT8 521 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 RNF114Q9Y508 228 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 HILPDAQ9Y5L2 63 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 MINOS1-NBL1R4GNA1 71 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 CMYA5Q8N3K9 4069 aa12.13□□□□□ -0.47
VPS39-210ENST00000568357 A0A087X0M5 115 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 A0A1B0GX30 115 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 CHST1O43916 411 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 IGLV1-47P01700 117 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 SRMP19623 302 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 CD34P28906 385 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 GLP1RP43220 463 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 RPS25P62851 125 aaKnown RBP12.12□□□□□ -0.47
VPS39-210ENST00000568357 MPV17LQ2QL34 196 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 RBM48Q5RL73 367 aaKnown RBP12.12□□□□□ -0.47
VPS39-210ENST00000568357 CCBE1Q6UXH8 406 aaPredicted RBP12.12□□□□□ -0.47
VPS39-210ENST00000568357 RTN4RL2Q86UN3 420 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 NKAIN3Q8N8D7 197 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 RFESDQ8TAC1 157 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 MRGPRDQ8TDS7 321 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 MRPS24Q96EL2 167 aaKnown RBP12.12□□□□□ -0.47
VPS39-210ENST00000568357 KIRREL1Q96J84 757 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 CYYR1Q96J86 154 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 UQCC2Q9BRT2 126 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 LINC00574Q9H8X3 128 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 TCF7L1Q9HCS4 588 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 ISYNA1Q9NPH2 558 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 CALYQ9NYX4 217 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 DSCAML1Q8TD84 2053 aa12.12□□□□□ -0.47
VPS39-210ENST00000568357 NPIPB11E5RHQ5 1161 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 UCHL1P09936 223 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 CD37P11049 281 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 CPEP16870 476 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 NFYBP25208 207 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 HTR1DP28221 377 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 PROK1P58294 105 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 MLLT11Q13015 90 aaPredicted RBP12.11□□□□□ -0.47
VPS39-210ENST00000568357 HSD17B12Q53GQ0 312 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 NDNFQ8TB73 568 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 PHYHIPQ92561 330 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 MGLLQ99685 303 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 SELENOIQ9C0D9 397 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 DPM3Q9P2X0 92 aa12.11□□□□□ -0.47
VPS39-210ENST00000568357 A6NDX4 124 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 LY6LH3BQJ8 138 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 CRTAPO75718 401 aaPredicted RBP12.1□□□□□ -0.47
VPS39-210ENST00000568357 IL1AP01583 271 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 IGHV3-7P01780 117 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 MT-ND4P03905 459 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 MGMTP16455 207 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 SSTR5P35346 364 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 DYNLT3P51808 116 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 C1orf100Q5SVJ3 147 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 SIGIRRQ6IA17 410 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 OR10K2Q6IF99 312 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 ZNF596Q8TC21 504 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 CCDC107Q8WV48 283 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 LEAP2Q969E1 77 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 FAM46BQ96A09 425 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 ZNF696Q9H7X3 374 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 ABCB10Q9NRK6 738 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 IDI2-AS1Q9NZ38 188 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 RCC2Q9P258 522 aaKnown RBP12.1□□□□□ -0.47
VPS39-210ENST00000568357 TCF19Q9Y242 345 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 SIGLEC9Q9Y336 463 aa12.1□□□□□ -0.47
VPS39-210ENST00000568357 TMEM30CPA0ZSE6 113 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 FAM90A22PA8MWA6 464 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 LEUTXA8MZ59 168 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 BUB1B-PAK6H3BSN5 160 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 TOR1AO14656 332 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 DENRO43583 198 aaKnown RBP12.09□□□□□ -0.47
VPS39-210ENST00000568357 GZMHP20718 246 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 KIR2DS4P43632 304 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 PRRX1P54821 245 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 LTC4SQ16873 150 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 HLA-DRB5Q30154 266 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 GLT8D1Q68CQ7 371 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 RAB12Q6IQ22 244 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 ZNF497Q6ZNH5 498 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 TMEM219Q86XT9 240 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms