RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 HMG20AQ9NP66 347 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 CALYQ9NYX4 217 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 IDI2-AS1Q9NZ38 188 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 ABCD2Q9UBJ2 740 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 ZNF107Q9UII5 783 aaPredicted RBP8.99□□□□□ -0.97
CLK3-222ENST00000568232 IKZF2Q9UKS7 526 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 FAM90A10PA6NDY2 464 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 KRT36O76013 467 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 MOSP00540 346 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 ZNF44P15621 663 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 CALB2P22676 271 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 RIDAP52758 137 aaKnown RBP8.98□□□□□ -0.97
CLK3-222ENST00000568232 RPS7P62081 194 aaKnown RBP8.98□□□□□ -0.97
CLK3-222ENST00000568232 ROM1Q03395 351 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 LINC00322Q6ZN03 302 aaPredicted RBP8.98□□□□□ -0.97
CLK3-222ENST00000568232 Q6ZSR3 168 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 CPOQ8IVL8 374 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 PGAM4Q8N0Y7 254 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 BORCS8Q96FH0 119 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 APOL4Q9BPW4 351 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 CHCHD6Q9BRQ6 235 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 GORASP2Q9H8Y8 452 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 OR6C3Q9NZP0 311 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 ZNF580Q9UK33 172 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 OR52A1Q9UKL2 312 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 STUB1Q9UNE7 303 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 CEPT1Q9Y6K0 416 aa8.98□□□□□ -0.97
CLK3-222ENST00000568232 TRAV39A0A0B4J263 110 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 IGKV1-12A0A0C4DH73 117 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 CXorf65A6NEN9 183 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 DHRS7CA6NNS2 312 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 SLC33A1O00400 549 aaPredicted RBP8.97□□□□□ -0.97
CLK3-222ENST00000568232 ATP6V0E1O15342 81 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 PRODHO43272 600 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 ZNF254O75437 659 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 GMNNO75496 209 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 IGKV1D-12P01611 117 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 IGHV3-11P01762 117 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 CSN2P05814 226 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 LGALS1P09382 135 aaKnown RBP8.97□□□□□ -0.97
CLK3-222ENST00000568232 HTR1FP30939 366 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 PSME3P61289 254 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 Q6P435 159 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 TEX47Q8TBZ9 253 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 NSL1Q96IY1 281 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 NIPSNAP1Q9BPW8 284 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 THAP7Q9BT49 309 aaPredicted RBP8.97□□□□□ -0.97
CLK3-222ENST00000568232 ELOVL1Q9BW60 279 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 YIPF3Q9GZM5 350 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 EFCAB1Q9HAE3 211 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 PLEKHA1Q9HB21 404 aa8.97□□□□□ -0.97
CLK3-222ENST00000568232 MEIKINA0A087WXM9 373 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 TRAV41A0A0B4J266 112 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 H3BN98 237 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 HSPB6O14558 160 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 SOX15O60248 233 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 IL1AP01583 271 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 SLC2A5P22732 501 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 CD1BP29016 333 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 SSTR5P35346 364 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 APOFQ13790 326 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 GALEQ14376 348 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 ZNF565Q8N9K5 539 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 RFT1Q96AA3 541 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 DGCR6LQ9BY27 220 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 KRTAP4-5Q9BYR2 181 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 ZCCHC4Q9H5U6 513 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 PLEKHA3Q9HB20 300 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 PARP11Q9NR21 331 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 ARL8BQ9NVJ2 186 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 CHCHD3Q9NX63 227 aaKnown RBP8.96□□□□□ -0.98
CLK3-222ENST00000568232 KIF25Q9UIL4 384 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 MYRFQ9Y2G1 1151 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 MRPS28Q9Y2Q9 187 aaKnown RBP8.96□□□□□ -0.98
CLK3-222ENST00000568232 R4GMQ9 66 aa8.96□□□□□ -0.98
CLK3-222ENST00000568232 PKHD1P08F94 4074 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 TNCP24821 2201 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 IGKV1-9A0A0C4DH69 117 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 NPIPB11E5RHQ5 1161 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 ANKRD65E5RJM6 399 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 CYB5AP00167 134 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 HSPB1P04792 205 aaKnown RBP8.95□□□□□ -0.98
CLK3-222ENST00000568232 CCL1P22362 96 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 RBP2P50120 134 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 ATP1B3P54709 279 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 GINS1Q14691 196 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 SLC35D3Q5M8T2 416 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 HACD2Q6Y1H2 254 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 GTSCR1Q86UQ5 136 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 MINDY2Q8NBR6 621 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 OR8H1Q8NGG4 311 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 MRGPRDQ8TDS7 321 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 RTN4IP1Q8WWV3 396 aaPredicted RBP8.95□□□□□ -0.98
CLK3-222ENST00000568232 CHST5Q9GZS9 411 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 COMMD4Q9H0A8 199 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 MOB1AQ9H8S9 216 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 LINC00574Q9H8X3 128 aa8.95□□□□□ -0.98
CLK3-222ENST00000568232 IZUMO1RA6ND01 250 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 DEGS1O15121 323 aa8.94□□□□□ -0.98
CLK3-222ENST00000568232 SYT7O43581 403 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms