RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TMEM14DPA8MWL7 114 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 AIPO00170 330 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 FUT3P21217 361 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 PRTN3P24158 256 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 SDC2P34741 201 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 GLP1RP43220 463 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 BPIFB3P59826 476 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 LSM3P62310 102 aaKnown RBP14.12□□□□□ -0.15
CLN3-217ENST00000565354 PRB3Q04118 309 aaPredicted RBP14.12□□□□□ -0.15
CLN3-217ENST00000565354 C2orf76Q3KRA6 126 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 RUSC1-AS1Q66K80 236 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 BRICD5Q6PL45 260 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 TREML4Q6UXN2 200 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 RBMS3Q6XE24 437 aaKnown RBP14.12□□□□□ -0.15
CLN3-217ENST00000565354 BRD3OSQ6XYD6 125 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 COQ2Q96H96 371 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 RNF167Q9H6Y7 350 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 HEXA-AS1Q9H8Q6 139 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 ZNF69Q9UC07 566 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 KIF25Q9UIL4 384 aa14.12□□□□□ -0.15
CLN3-217ENST00000565354 IGHV1-69DA0A0B4J2H0 117 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 CENPVL3A0A0U1RRI6 287 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 TMEM30CPA0ZSE6 113 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 PDCD6O75340 191 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 IGHV1-69P01742 117 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 DLX1P56177 255 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 UBA52P62987 128 aaKnown RBP14.11□□□□□ -0.15
CLN3-217ENST00000565354 FOXL1Q12952 345 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 KLRD1Q13241 179 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 UNC119Q13432 240 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 ZNF782Q6ZMW2 699 aaPredicted RBP14.11□□□□□ -0.15
CLN3-217ENST00000565354 ZNF565Q8N9K5 539 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 OR13F1Q8NGS4 319 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 PLPPR1Q8TBJ4 325 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 LIN7BQ9HAP6 207 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 ETAA1Q9NY74 926 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 TAS2R3Q9NYW6 316 aa14.11□□□□□ -0.15
CLN3-217ENST00000565354 RCC2Q9P258 522 aaKnown RBP14.11□□□□□ -0.15
CLN3-217ENST00000565354 A0A1W2PRD5 423 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 A0A1W2PRF3 423 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 A0A1W2PRM7 423 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 C17orf98A8MV24 154 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 HKR1P10072 659 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 COX7A1P24310 79 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 QRFPP83859 136 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 FAM189A2Q15884 450 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 RSBN1Q5VWQ0 802 aaPredicted RBP14.1□□□□□ -0.15
CLN3-217ENST00000565354 SLC35E4Q6ICL7 350 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 TCF23Q7RTU1 214 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 GPR141Q7Z602 305 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 NICN1Q9BSH3 213 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 FUNDC2Q9BWH2 189 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 TM2D1Q9BX74 207 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 DAPK2Q9UIK4 370 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 RAB22AQ9UL26 194 aa14.1□□□□□ -0.15
CLN3-217ENST00000565354 TMEM272A0A1B0GTI8 110 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 UBE2QL1A1L167 161 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 ZNF729A6NN14 1252 aaPredicted RBP14.09□□□□□ -0.15
CLN3-217ENST00000565354 RNASEK-C17orf49H0YIS7 233 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 CLPXO76031 633 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 RBP4P02753 201 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 GLAP06280 429 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 CLEC2LP0C7M8 214 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 SLC2A2P11168 524 aaPredicted RBP14.09□□□□□ -0.15
CLN3-217ENST00000565354 BLVRBP30043 206 aaPredicted RBP14.09□□□□□ -0.15
CLN3-217ENST00000565354 MIDNQ504T8 468 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 SFXN4Q6P4A7 337 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 BCL6BQ8N143 479 aaPredicted RBP14.09□□□□□ -0.15
CLN3-217ENST00000565354 OR13D1Q8NGV5 346 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 MRGPRDQ8TDS7 321 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 CORO2AQ92828 525 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 ZDHHC16Q969W1 377 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 LPAR5Q9H1C0 372 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 UNKLQ9H9P5 680 aaKnown RBP14.09□□□□□ -0.15
CLN3-217ENST00000565354 PLEKHJ1Q9NW61 149 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 SESN1Q9Y6P5 492 aa14.09□□□□□ -0.15
CLN3-217ENST00000565354 IGHV1-8P0DP01 117 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 VEGFCP49767 419 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 UBE2E1P51965 193 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 DLX6P56179 175 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 LGALS4P56470 323 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 NR2C2APQ86WQ0 139 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 PNKDQ8N490 385 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 OR56B1Q8NGI3 324 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 OR13A1Q8NGR1 328 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 CCDC107Q8WV48 283 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 TNFRSF14Q92956 283 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 NCOR1P1Q9H4R4 102 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 FBLN5Q9UBX5 448 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 TRAPPC2LQ9UL33 140 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 FAM96BQ9Y3D0 163 aa14.08□□□□□ -0.16
CLN3-217ENST00000565354 A0A0B4J203 849 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 MEIOCA2RUB1 952 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 METTL21EPA6NDL7 271 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 NPFFO15130 113 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 CA11O75493 328 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 CDK2P24941 298 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 CHATP28329 748 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 TGFBR1P36897 503 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 SERPINB10P48595 397 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms