RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 RFESDQ8TAC1 157 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 PLPPR1Q8TBJ4 325 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 MRGPRDQ8TDS7 321 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 ORAI1Q96D31 301 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 R3HDM4Q96D70 268 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 RBM14Q96PK6 669 aaKnown RBP17.97■□□□□ 0.47
CLN3-215ENST00000565236 OR4F4Q96R69 305 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 DPCDQ9BVM2 203 aaPredicted RBP17.97■□□□□ 0.47
CLN3-215ENST00000565236 LINC00574Q9H8X3 128 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 PCDHB16Q9NRJ7 776 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 IL36GQ9NZH8 169 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.97■□□□□ 0.47
CLN3-215ENST00000565236 CKLFQ9UBR5 152 aa17.97■□□□□ 0.47
CLN3-215ENST00000565236 AMMECR1Q9Y4X0 333 aaPredicted RBP17.97■□□□□ 0.47
CLN3-215ENST00000565236 PRKDCP78527 4128 aaKnown RBP17.96■□□□□ 0.47
CLN3-215ENST00000565236 J3QR06 171 aa17.96■□□□□ 0.47
CLN3-215ENST00000565236 OR7C1O76099 320 aaPredicted RBP17.96■□□□□ 0.47
CLN3-215ENST00000565236 ADARB1P78563 741 aaKnown RBP17.96■□□□□ 0.47
CLN3-215ENST00000565236 ST3GAL4Q11206 333 aa17.96■□□□□ 0.47
CLN3-215ENST00000565236 RIPK1Q13546 671 aa17.96■□□□□ 0.47
CLN3-215ENST00000565236 LTC4SQ16873 150 aa17.96■□□□□ 0.47
CLN3-215ENST00000565236 ABCA11PQ4W5N1 156 aa17.96■□□□□ 0.47
CLN3-215ENST00000565236 DMKNQ6E0U4 476 aaPredicted RBP17.96■□□□□ 0.47
CLN3-215ENST00000565236 CENPVQ7Z7K6 275 aaPredicted RBP17.96■□□□□ 0.47
CLN3-215ENST00000565236 GGHQ92820 318 aa17.96■□□□□ 0.47
CLN3-215ENST00000565236 RPEQ96AT9 228 aa17.96■□□□□ 0.47
CLN3-215ENST00000565236 NOTCH3Q9UM47 2321 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 XPNPEP2O43895 674 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 ZNF780AO75290 641 aaPredicted RBP17.95■□□□□ 0.46
CLN3-215ENST00000565236 IGHV3-7P01780 117 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 FAM106CPP0CH98 169 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 SERPINA2P20848 420 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 RBM11P57052 281 aaKnown RBP17.95■□□□□ 0.46
CLN3-215ENST00000565236 Q499Y3 187 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 YIF1BQ5BJH7 314 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 NHLRC3Q5JS37 347 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 LEAP2Q969E1 77 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 TOMM40LQ969M1 308 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 ZNF184Q99676 751 aaPredicted RBP17.95■□□□□ 0.46
CLN3-215ENST00000565236 IFT22Q9H7X7 185 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 PSG11Q9UQ72 335 aa17.95■□□□□ 0.46
CLN3-215ENST00000565236 TRAV39A0A0B4J263 110 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 TRBV5-5A0A0J9YX44 114 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 NPIPB11E5RHQ5 1161 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 GEMIN2O14893 280 aaKnown RBP17.94■□□□□ 0.46
CLN3-215ENST00000565236 LPLP06858 475 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 GZMHP20718 246 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 RCN1Q15293 331 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 BEAN1Q3B7T3 259 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 SLC22A6Q4U2R8 563 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 LINC00596Q86U02 117 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 ZFP41Q8N8Y5 198 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 OR10A7Q8NGE5 316 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 ZNF581Q9P0T4 197 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 HSPE1-MOB4S4R3N1 261 aa17.94■□□□□ 0.46
CLN3-215ENST00000565236 EFCAB10A6NFE3 127 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 ADARB2-AS1A8MUL3 147 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 M0QZK8 103 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 GPX5O75715 221 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 GTF2F2P13984 249 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 IGFBP3P17936 291 aaPredicted RBP17.93■□□□□ 0.46
CLN3-215ENST00000565236 MADCAM1Q13477 382 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 FBLN7Q53RD9 439 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 ATAD3CQ5T2N8 411 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 SAMD5Q5TGI4 173 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 SLC16A12Q6ZSM3 486 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 ZNF485Q8NCK3 441 aa17.93■□□□□ 0.46
CLN3-215ENST00000565236 TMEM30CPA0ZSE6 113 aa17.92■□□□□ 0.46
CLN3-215ENST00000565236 SSTR5P35346 364 aa17.92■□□□□ 0.46
CLN3-215ENST00000565236 GNG10P50151 68 aa17.92■□□□□ 0.46
CLN3-215ENST00000565236 TAS2R43P59537 309 aa17.92■□□□□ 0.46
CLN3-215ENST00000565236 RPS11P62280 158 aaKnown RBP eCLIP17.92■□□□□ 0.46
CLN3-215ENST00000565236 CD83Q01151 205 aa17.92■□□□□ 0.46
CLN3-215ENST00000565236 GPR176Q14439 515 aa17.92■□□□□ 0.46
CLN3-215ENST00000565236 MPV17LQ2QL34 196 aa17.92■□□□□ 0.46
CLN3-215ENST00000565236 C9orf152Q5JTZ5 239 aa17.92■□□□□ 0.46
CLN3-215ENST00000565236 THNSL2Q86YJ6 484 aa17.92■□□□□ 0.46
CLN3-215ENST00000565236 C8orf59Q8N0T1 100 aaPredicted RBP17.92■□□□□ 0.46
CLN3-215ENST00000565236 NEK7Q8TDX7 302 aa17.92■□□□□ 0.46
CLN3-215ENST00000565236 TRAV8-7A0A075B6U6 113 aa17.91■□□□□ 0.46
CLN3-215ENST00000565236 A0A1W2PPK0 400 aa17.91■□□□□ 0.46
CLN3-215ENST00000565236 A0A1W2PRX2 142 aa17.91■□□□□ 0.46
CLN3-215ENST00000565236 SH2D7A6NKC9 451 aaPredicted RBP17.91■□□□□ 0.46
CLN3-215ENST00000565236 AMY1AP04745 511 aa17.91■□□□□ 0.46
CLN3-215ENST00000565236 AMY2AP04746 511 aa17.91■□□□□ 0.46
CLN3-215ENST00000565236 CAPGP40121 348 aa17.91■□□□□ 0.46
CLN3-215ENST00000565236 OR10X1Q8NGY0 326 aa17.91■□□□□ 0.46
CLN3-215ENST00000565236 OR56B4Q8NH76 319 aa17.91■□□□□ 0.46
CLN3-215ENST00000565236 PGLYRP3Q96LB9 341 aa17.91■□□□□ 0.46
CLN3-215ENST00000565236 OR14A2Q96R54 314 aa17.91■□□□□ 0.46
CLN3-215ENST00000565236 CNOT2Q9NZN8 540 aaKnown RBP17.91■□□□□ 0.46
CLN3-215ENST00000565236 PNMA8CA0A1B0GUJ8 204 aa17.9■□□□□ 0.46
CLN3-215ENST00000565236 A0A1W2PP11 408 aa17.9■□□□□ 0.46
CLN3-215ENST00000565236 FAM90A18PA6NE21 464 aa17.9■□□□□ 0.46
CLN3-215ENST00000565236 FAM90A16PA6NEW6 464 aa17.9■□□□□ 0.46
CLN3-215ENST00000565236 FAM90A20PA6NIJ5 464 aa17.9■□□□□ 0.46
CLN3-215ENST00000565236 FAM90A9PA6NNJ1 464 aa17.9■□□□□ 0.46
CLN3-215ENST00000565236 FAM90A12PA8MX19 464 aa17.9■□□□□ 0.46
CLN3-215ENST00000565236 FAM90A5PA8MXJ8 464 aa17.9■□□□□ 0.46
CLN3-215ENST00000565236 SNRNP70P08621 437 aaKnown RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms