RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 PTBP1P26599 531 aaKnown RBP eCLIP17.05■□□□□ 0.32
CLN3-212ENST00000564574 LCN2P80188 198 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 PYHIN1Q6K0P9 492 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 TPRX1Q8N7U7 411 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 DTX3Q8N9I9 347 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 MRPL30Q8TCC3 161 aaKnown RBP17.05■□□□□ 0.32
CLN3-212ENST00000564574 DYRK2Q92630 601 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 CORO2AQ92828 525 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 CHMP1AQ9HD42 196 aaPredicted RBP17.05■□□□□ 0.32
CLN3-212ENST00000564574 C19orf12Q9NSK7 152 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 ING3Q9NXR8 418 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 MRPS7Q9Y2R9 242 aaKnown RBP17.05■□□□□ 0.32
CLN3-212ENST00000564574 LINC00312Q9Y6C7 94 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 ABCA2Q9BZC7 2435 aa17.05■□□□□ 0.32
CLN3-212ENST00000564574 TRGV10A0A0A0MS01 117 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 A0A1W2PQ09 198 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 FABP12A6NFH5 140 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 C22orf46C9J442 243 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 LIPFP07098 398 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 MSMBP08118 114 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 ETV6P41212 452 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 IL18Q14116 193 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 SPANXN2Q5MJ10 180 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 TRAT1Q6PIZ9 186 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 MOB1BQ7L9L4 216 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 FAM185AQ8N0U4 392 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 MAPK1IP1LQ8NDC0 245 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 COX4I2Q96KJ9 171 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 SOSTQ9BQB4 213 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 SCPEP1Q9HB40 452 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 MGAT4AQ9UM21 535 aa17.04■□□□□ 0.32
CLN3-212ENST00000564574 UBE2J1Q9Y385 318 aaPredicted RBP17.04■□□□□ 0.32
CLN3-212ENST00000564574 TRAV20A0A0B4J274 112 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 IGHV2-70DA0A0C4DH43 119 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 SULT1C2O00338 296 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 PPIAL4GP0DN37 164 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 IGHV4-31P0DP07 118 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 DTYMKP23919 212 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 PRSS3P35030 304 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 CBX5P45973 191 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 MRPS10P82664 201 aaKnown RBP17.03■□□□□ 0.32
CLN3-212ENST00000564574 PAX2Q02962 417 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 CR1LQ2VPA4 569 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 C6orf183Q5T699 404 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 ZNF880Q6PDB4 577 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 ZNF554Q86TJ5 538 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 ZNF565Q8N9K5 539 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 DACT3Q96B18 629 aaPredicted RBP17.03■□□□□ 0.32
CLN3-212ENST00000564574 CYYR1Q96J86 154 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 MBNL3Q9NUK0 354 aaKnown RBP17.03■□□□□ 0.32
CLN3-212ENST00000564574 TAS2R3Q9NYW6 316 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 TRAPPC2LQ9UL33 140 aa17.03■□□□□ 0.32
CLN3-212ENST00000564574 ARHGAP32A7KAX9 2087 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 KIR2DS1A0A191URI9 304 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 CTDSPLO15194 276 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 GZMHP20718 246 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 SRSF7Q16629 238 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLN3-212ENST00000564574 TMEM200BQ69YZ2 307 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 CYB5R2Q6BCY4 276 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 FAM131AQ6UXB0 335 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 BTNL3Q6UXE8 466 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 TRAPPC6BQ86SZ2 158 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 SNX29P2Q8IUI4 249 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 CIARTQ8N365 385 aaPredicted RBP17.02■□□□□ 0.32
CLN3-212ENST00000564574 OR4K15Q8NH41 348 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 NUDCD2Q8WVJ2 157 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 HDHD3Q9BSH5 251 aaPredicted RBP17.02■□□□□ 0.32
CLN3-212ENST00000564574 OPN4Q9UHM6 478 aa17.02■□□□□ 0.32
CLN3-212ENST00000564574 ELF5Q9UKW6 265 aaPredicted RBP17.02■□□□□ 0.32
CLN3-212ENST00000564574 KIAA2026Q5HYC2 2103 aa17.02■□□□□ 0.31
CLN3-212ENST00000564574 AKAP9Q99996 3911 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 A0A0G2JMP0 313 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 A0A0X1KG70 313 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 ZNF729A6NN14 1252 aaPredicted RBP17.01■□□□□ 0.31
CLN3-212ENST00000564574 SMAD7O15105 426 aaKnown RBP17.01■□□□□ 0.31
CLN3-212ENST00000564574 ORC5O43913 435 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 GATA3P23771 443 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 GLP1RP43220 463 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 ZNF273Q14593 569 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 TCF23Q7RTU1 214 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 GLCCI1Q86VQ1 547 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 KIR3DL3Q8N743 410 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 OR4M2Q8NGB6 313 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 OR13A1Q8NGR1 328 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 MSI2Q96DH6 328 aaKnown RBP17.01■□□□□ 0.31
CLN3-212ENST00000564574 ZNF714Q96N38 554 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 ABHD1Q96SE0 405 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 GAL3ST2Q9H3Q3 398 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 LPAR2Q9HBW0 351 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 RAB9BQ9NP90 201 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 KCNIP1Q9NZI2 227 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 V9GYH0 126 aa17.01■□□□□ 0.31
CLN3-212ENST00000564574 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.01■□□□□ 0.317e-9■■□□□ 13.5
CLN3-212ENST00000564574 SSX5O60225 188 aa17■□□□□ 0.31
CLN3-212ENST00000564574 LPLP06858 475 aa17■□□□□ 0.31
CLN3-212ENST00000564574 FCGR3AP08637 254 aa17■□□□□ 0.31
CLN3-212ENST00000564574 DVL1P1P54792 670 aaPredicted RBP17■□□□□ 0.31
CLN3-212ENST00000564574 ZNF45Q02386 682 aa17■□□□□ 0.31
CLN3-212ENST00000564574 MADCAM1Q13477 382 aa17■□□□□ 0.31
CLN3-212ENST00000564574 SETD6Q8TBK2 473 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms