RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SLC2A2P11168 524 aaPredicted RBP5.65□□□□□ -1.5
VPS4A-203ENST00000564399 PRKACBP22694 351 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 HTR1FP30939 366 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 MTNR1BP49286 362 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 RAB9AP51151 201 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 F2RL1P55085 397 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 CDK5Q00535 292 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 PDZK1IP1Q13113 114 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 KIAA0141Q14154 515 aaPredicted RBP5.65□□□□□ -1.5
VPS4A-203ENST00000564399 PAN3Q58A45 887 aaKnown RBP5.65□□□□□ -1.5
VPS4A-203ENST00000564399 HDXQ7Z353 690 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 SATL1Q86VE3 508 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 ANKRD13BQ86YJ7 626 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 SLC35F2Q8IXU6 374 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 PGAM4Q8N0Y7 254 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 DNAAF1Q8NEP3 725 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 OR8H1Q8NGG4 311 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 OR5D18Q8NGL1 313 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 MRGPRDQ8TDS7 321 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 LINC00476Q8WZB0 136 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 CHCHD6Q9BRQ6 235 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 RSRP1Q9BUV0 290 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 TMED9Q9BVK6 235 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 ELOVL1Q9BW60 279 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 COMMD4Q9H0A8 199 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF556Q9HAH1 456 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 TVP23BQ9NYZ1 205 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 MRM2Q9UI43 246 aaKnown RBP5.65□□□□□ -1.5
VPS4A-203ENST00000564399 MUC4Q99102 2169 aa5.65□□□□□ -1.51
VPS4A-203ENST00000564399 IGHV4OR15-8A0A075B7B6 117 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 A0A087WW49 117 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 TRAV39A0A0B4J263 110 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 IGKV1-12A0A0C4DH73 117 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 ZNF736B4DX44 427 aaPredicted RBP5.64□□□□□ -1.51
VPS4A-203ENST00000564399 C12orf77C9JDV5 145 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 IGKV1D-12P01611 117 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 KRT8P05787 483 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 OSMP13725 252 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 ZNF20P17024 532 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 ATF1P18846 271 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 ATP6V1B2P21281 511 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 IL3RAP26951 378 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 CNTFRP26992 372 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 CD1BP29016 333 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 PPIFP30405 207 aaKnown RBP5.64□□□□□ -1.51
VPS4A-203ENST00000564399 KIR3DL2P43630 455 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 TMEM236Q5W0B7 351 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 Q6P435 159 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 SLC16A12Q6ZSM3 486 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 CCDC54Q8NEL0 328 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 PP6455Q8WZ26 134 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 C10orf35Q96D05 121 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 OPALINQ96PE5 141 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 SPACA5Q96QH8 159 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 NR1H4Q96RI1 486 aaPredicted RBP5.64□□□□□ -1.51
VPS4A-203ENST00000564399 MNTQ99583 582 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 FAM110AQ9BQ89 295 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 BARHL1Q9BZE3 327 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 ZCCHC4Q9H5U6 513 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 RETNQ9HD89 108 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 PARP11Q9NR21 331 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 FAM118AQ9NWS6 357 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 H2AFY2Q9P0M6 372 aaPredicted RBP5.64□□□□□ -1.51
VPS4A-203ENST00000564399 KIAA1456Q9P272 454 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 ZNF580Q9UK33 172 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 STUB1Q9UNE7 303 aa5.64□□□□□ -1.51
VPS4A-203ENST00000564399 MRPS28Q9Y2Q9 187 aaKnown RBP5.64□□□□□ -1.51
VPS4A-203ENST00000564399 TRAV41A0A0B4J266 112 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 IGKV1-9A0A0C4DH69 117 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 LOC107986453A0A1B0GWG9 222 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 NPIPB11E5RHQ5 1161 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 H0YJX3 145 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 GNGT2O14610 69 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 ATP6V0E1O15342 81 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 KDM4BO94953 1096 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 IGLV1-40P01703 118 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 TMEM225BP0DP42 221 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 PRDX6P30041 224 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 SSTR5P35346 364 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 GALEQ14376 348 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 MMDQ15546 238 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 FAM98BQ52LJ0 330 aaKnown RBP5.63□□□□□ -1.51
VPS4A-203ENST00000564399 RDH10Q8IZV5 341 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 OR10A7Q8NGE5 316 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 OR51T1Q8NGJ9 327 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 RTN4IP1Q8WWV3 396 aaPredicted RBP5.63□□□□□ -1.51
VPS4A-203ENST00000564399 FLYWCH2Q96CP2 140 aaKnown RBP5.63□□□□□ -1.51
VPS4A-203ENST00000564399 ADAT3Q96EY9 351 aaPredicted RBP5.63□□□□□ -1.51
VPS4A-203ENST00000564399 TBX5Q99593 518 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 TOLLIPQ9H0E2 274 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 NCOR1P1Q9H4R4 102 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 MAGIXQ9H6Y5 334 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 LINC00574Q9H8X3 128 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 CLN6Q9NWW5 311 aa5.63□□□□□ -1.51
VPS4A-203ENST00000564399 FAM90A10PA6NDY2 464 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 CST1P01037 141 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 IGLV1-51P01701 117 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 IGHV3-11P01762 117 aa5.62□□□□□ -1.51
VPS4A-203ENST00000564399 LGALS1P09382 135 aaKnown RBP5.62□□□□□ -1.51
VPS4A-203ENST00000564399 GK3PQ14409 553 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms