RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 PIGYQ3MUY2 71 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 MYDGFQ969H8 173 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 TMEM106AQ96A25 262 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 RPEQ96AT9 228 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 PHF21AQ96BD5 680 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 SMPD3Q9NY59 655 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 MOB4Q9Y3A3 225 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 HSPE1-MOB4S4R3N1 261 aa13.69□□□□□ -0.22
VPS9D1-203ENST00000563798 A0A1W2PPI3 338 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 TCRBV4S1A1TA0A5B7 111 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 IRGMA1A4Y4 181 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 HSPB6O14558 160 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 GPX5O75715 221 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 RAB7AP51149 207 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 MADCAM1Q13477 382 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 RBM39Q14498 530 aaKnown RBP13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 TMPRSS11AQ6ZMR5 421 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 LINC00596Q86U02 117 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 SATL1Q86VE3 508 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 OR8H3Q8N146 312 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 OSR2Q8N2R0 312 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 SUMF2Q8NBJ7 301 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 ZNF555Q8NEP9 628 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 OR4X2Q8NGF9 303 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 OR10K1Q8NGX5 313 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 TOMM40LQ969M1 308 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 DPCDQ9BVM2 203 aaPredicted RBP13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 BABAM2Q9NXR7 383 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 DIMT1Q9UNQ2 313 aaKnown RBP13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 ST3GAL6Q9Y274 331 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 ZNF281Q9Y2X9 895 aa13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 SIRT4Q9Y6E7 314 aaPredicted RBP13.68□□□□□ -0.22
VPS9D1-203ENST00000563798 TRBV5-5A0A0J9YX44 114 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 PIN1P1O15428 100 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 HTR3BO95264 441 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 IGFBP3P17936 291 aaPredicted RBP13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 GZMHP20718 246 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 RBM11P57052 281 aaKnown RBP13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 LOXL3P58215 753 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 OR2G6Q5TZ20 316 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 C8orf31Q8N9H6 132 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 OR52M1Q8NGK5 317 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 MRGPRDQ8TDS7 321 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 SGCDQ92629 289 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 SMIM19Q96E16 107 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 METTL9Q9H1A3 318 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 PAK1IP1Q9NWT1 392 aaPredicted RBP13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 AURKAIP1Q9NWT8 199 aaPredicted RBP13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 DNAH3Q8TD57 4116 aa13.67□□□□□ -0.22
VPS9D1-203ENST00000563798 A0A1W2PRX2 142 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 FGF16O43320 207 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 ZNF780AO75290 641 aaPredicted RBP13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 CDRT1O95170 752 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 SNRNP70P08621 437 aaKnown RBP13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 PF4V1P10720 104 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 CD33P20138 364 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 BDKRB2P30411 391 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 SSTR5P35346 364 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 ZNF93P35789 620 aaPredicted RBP13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 PPP3R1P63098 170 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 EBI3Q14213 229 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 MPV17LQ2QL34 196 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 FOXB2Q5VYV0 432 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 ZNF485Q8NCK3 441 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 OR52N1Q8NH53 320 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 OR56B4Q8NH76 319 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 RFESDQ8TAC1 157 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 FAM192AQ9GZU8 254 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 ZNF581Q9P0T4 197 aa13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 EXOSC1Q9Y3B2 195 aaKnown RBP13.66□□□□□ -0.22
VPS9D1-203ENST00000563798 SH2D7A6NKC9 451 aaPredicted RBP13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 C15orf65H3BRN8 121 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 LALBAP00709 142 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 IGLL1P15814 213 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 ZNF816Q0VGE8 651 aaPredicted RBP13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 DIAPH2-AS1Q14236 149 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 DDI2Q5TDH0 399 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 DMKNQ6E0U4 476 aaPredicted RBP13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 C10orf99Q6UWK7 81 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 LINC00311Q8N616 119 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 DRAM1Q8N682 238 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 C5orf56Q8N8D9 126 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 MRAPQ8TCY5 172 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 LEAP2Q969E1 77 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 RCC1LQ96I51 464 aaKnown RBP13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 ING4Q9UNL4 249 aa13.65□□□□□ -0.22
VPS9D1-203ENST00000563798 TMEM30CPA0ZSE6 113 aa13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 GEMIN2O14893 280 aaKnown RBP13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 ORC5O43913 435 aa13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 OR7C1O76099 320 aaPredicted RBP13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 DUS4LO95620 317 aaKnown RBP13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 IGHV3-7P01780 117 aa13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 CSTBP04080 98 aaKnown RBP13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 RPS11P62280 158 aaKnown RBP eCLIP13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 SLC35A2P78381 396 aa13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 RIPK1Q13546 671 aa13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 Q3ZCU0 254 aa13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 YIF1BQ5BJH7 314 aa13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 TTC23Q5W5X9 447 aa13.64□□□□□ -0.23
VPS9D1-203ENST00000563798 GHSRQ92847 366 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms