RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 C3orf84H3BNL1 204 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 AP4M1O00189 453 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 RPSAP08865 295 aaKnown RBP12.89□□□□□ -0.35
CLN3-208ENST00000561505 HTR1AP08908 422 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 CFHR3Q02985 330 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 ALKBH1Q13686 389 aaKnown RBP12.89□□□□□ -0.35
CLN3-208ENST00000561505 PNLIPRP3Q17RR3 467 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 FOXRED2Q8IWF2 684 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 PLPPR1Q8TBJ4 325 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 ST6GALNAC6Q969X2 333 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 EAF1Q96JC9 268 aaPredicted RBP12.89□□□□□ -0.35
CLN3-208ENST00000561505 IFT22Q9H7X7 185 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 LIN7CQ9NUP9 197 aaKnown RBP12.89□□□□□ -0.35
CLN3-208ENST00000561505 LINC00527Q9UJ94 153 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 AP4S1Q9Y587 144 aa12.89□□□□□ -0.35
CLN3-208ENST00000561505 MEIKINA0A087WXM9 373 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 IGHV1-3A0A0C4DH29 117 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 SULT1B1O43704 296 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 IGKV1D-33P01593 117 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 IGKV1-33P01594 117 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 GPR12P47775 334 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 SNRPGP62308 76 aaKnown RBP12.88□□□□□ -0.35
CLN3-208ENST00000561505 FOXE3Q13461 319 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 FHL3Q13643 280 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 ZNF691Q5VV52 312 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 SERPINA12Q8IW75 414 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 Q8N9W7 124 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 TMEM104Q8NE00 496 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 OR52M1Q8NGK5 317 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 OR5D14Q8NGL3 314 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 OR13C3Q8NGS6 347 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 MYOZ3Q8TDC0 251 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 TFAP2CQ92754 450 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 LEAP2Q969E1 77 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 RIBC2Q9H4K1 309 aa12.88□□□□□ -0.35
CLN3-208ENST00000561505 DAPL1A0PJW8 107 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 NUDT19A8MXV4 375 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 CCRL2O00421 344 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 RPLP1P05386 114 aaKnown RBP12.87□□□□□ -0.35
CLN3-208ENST00000561505 ELANEP08246 267 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 TMEM225BP0DP42 221 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 GLP1RP43220 463 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 HES1Q14469 280 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 Q3ZCU0 254 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 PAN3Q58A45 887 aaKnown RBP12.87□□□□□ -0.35
CLN3-208ENST00000561505 NHLRC3Q5JS37 347 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 C9orf66Q5T8R8 295 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 AMIGO2Q86SJ2 522 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 SYS1Q8N2H4 156 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 ACBD7Q8N6N7 88 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 OR8U1Q8NH10 309 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 GON7Q9BXV9 100 aa12.87□□□□□ -0.35
CLN3-208ENST00000561505 DNAH7Q8WXX0 4024 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 HSD17B6O14756 317 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 IGHV3-7P01780 117 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 IGHG4P01861 327 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 GAPDHP04406 335 aaKnown RBP12.86□□□□□ -0.35
CLN3-208ENST00000561505 FCGR1AP12314 374 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 GZMHP20718 246 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 CHATP28329 748 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 CD1BP29016 333 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 BNIP1Q12981 228 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 HNF4GQ14541 408 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 MEDAGQ5VYS4 303 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 OR5M8Q8NGP6 311 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 RFESDQ8TAC1 157 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 RNFT2Q96EX2 444 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 CENPNQ96H22 339 aaPredicted RBP12.86□□□□□ -0.35
CLN3-208ENST00000561505 DUX3Q96PT4 197 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 ING3Q9NXR8 418 aa12.86□□□□□ -0.35
CLN3-208ENST00000561505 SIRT4Q9Y6E7 314 aaPredicted RBP12.86□□□□□ -0.35
CLN3-208ENST00000561505 RYR2Q92736 4967 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 HUWE1Q7Z6Z7 4374 aaKnown RBP12.85□□□□□ -0.35
CLN3-208ENST00000561505 C15orf65H3BRN8 121 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 MPZL2O60487 215 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 IGF1P05019 195 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 OCM2P0CE71 109 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 OCMP0CE72 109 aaPredicted RBP12.85□□□□□ -0.35
CLN3-208ENST00000561505 SSTR5P35346 364 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 VHLP40337 213 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 LUMP51884 338 aaPredicted RBP12.85□□□□□ -0.35
CLN3-208ENST00000561505 ZNF137PP52743 207 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 GPR50Q13585 617 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 GALEQ14376 348 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 KLHL22Q53GT1 634 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 FAM71E2Q8N5Q1 922 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 OR8H1Q8NGG4 311 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 OR2T10Q8NGZ9 312 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 MRGPRDQ8TDS7 321 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 C4orf36Q96KX1 117 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 OAZ3Q9UMX2 235 aa12.85□□□□□ -0.35
CLN3-208ENST00000561505 TMEM212A6NML5 194 aa12.84□□□□□ -0.35
CLN3-208ENST00000561505 J3QLW9 94 aa12.84□□□□□ -0.35
CLN3-208ENST00000561505 GABRPO00591 440 aa12.84□□□□□ -0.35
CLN3-208ENST00000561505 ZNF19P17023 458 aa12.84□□□□□ -0.35
CLN3-208ENST00000561505 PSMB8P28062 276 aa12.84□□□□□ -0.35
CLN3-208ENST00000561505 MRPL28Q13084 256 aaKnown RBP12.84□□□□□ -0.35
CLN3-208ENST00000561505 KIAA0141Q14154 515 aaPredicted RBP12.84□□□□□ -0.35
CLN3-208ENST00000561505 CXorf66Q5JRM2 361 aaPredicted RBP12.84□□□□□ -0.35
CLN3-208ENST00000561505 OR10X1Q8NGY0 326 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms