RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 KCNJ8Q15842 424 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 ADIPOQQ15848 244 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 PRAMEF5Q5TYX0 476 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 TMEM217Q8N7C4 229 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 UBAC2Q8NBM4 344 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 C1orf162Q8NEQ5 155 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 OR1L1Q8NH94 360 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 COQ8AQ8NI60 647 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 THAP6Q8TBB0 222 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 RPEQ96AT9 228 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 PINX1Q96BK5 328 aaKnown RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 RAB39BQ96DA2 213 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 SRRQ9GZT4 340 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 LPAR5Q9H1C0 372 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 LIME1Q9H400 295 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF665Q9H7R5 613 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 PNRC2Q9NPJ4 139 aaKnown RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 NSG2Q9Y328 171 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 FCGR3BO75015 233 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 SNAPC5O75971 98 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 IGHV1-46P01743 117 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 HOXB1P14653 301 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 PPP3CBP16298 524 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF14P17017 642 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 CRYGSP22914 178 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 TDGF1P3P51864 188 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 LUMP51884 338 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 RBM11P57052 281 aaKnown RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 RPS27AP62979 156 aaKnown RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 MEF2DQ14814 521 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 RBMS2Q15434 407 aaKnown RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 Q8IYB0 196 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 PCNPQ8WW12 178 aaKnown RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 HPSE2Q8WWQ2 592 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 OR5P3Q8WZ94 311 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 SNAPC3Q92966 411 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 RBMXL1Q96E39 390 aaKnown RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 MARS2Q96GW9 593 aaKnown RBP4.62□□□□□ -1.67
VPS13C-209ENST00000560637 CLUHP3Q96NS8 147 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 KCNK7Q9Y2U2 307 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 ARHGAP32A7KAX9 2087 aa4.62□□□□□ -1.67
VPS13C-209ENST00000560637 hADV38S2A0JD32 116 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 C19orf84I3L1E1 186 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 ETV2O00321 342 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SHOXO15266 292 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SPNP16150 400 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SSTR2P30874 369 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 PMELP40967 661 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 LY6EQ16553 131 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SPNS3Q6ZMD2 512 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 CCDC71LQ8N9Z2 235 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 INO80EQ8NBZ0 244 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 OR8H1Q8NGG4 311 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 RTN4IP1Q8WWV3 396 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 FAM168AQ92567 244 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SLC25A38Q96DW6 304 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SDSLQ96GA7 329 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 CYYR1Q96J86 154 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 FYTTD1Q96QD9 318 aaKnown RBP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 PHB2Q99623 299 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 OR51J1Q9H342 316 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 METRNQ9UJH8 293 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 KIAA1549Q9HCM3 1950 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 IGSF10Q6WRI0 2623 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 ADGRG4Q8IZF6 3080 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 PTBP3O95758 552 aaKnown RBP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 IFNA4P05014 189 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 COX5BP10606 129 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 DNASE1P24855 282 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 COL8A2P25067 703 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 MRPS10P82664 201 aaKnown RBP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SSX2Q16385 188 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF672Q499Z4 452 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SHEQ5VZ18 495 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF843Q8N446 348 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 C12orf45Q8N5I9 185 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SMIM4Q8WVI0 70 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 AQP3Q92482 292 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 PPP1R14BQ96C90 147 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 RHOVQ96L33 236 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 S1PR3Q99500 378 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF649Q9BS31 505 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF471Q9BX82 626 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 C20orf85Q9H1P6 137 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 RIMS4Q9H426 269 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.61□□□□□ -1.67
VPS13C-209ENST00000560637 WDFY3Q8IZQ1 3526 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 IGKV1-27A0A075B6S5 117 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 IGKV1-12A0A0C4DH73 117 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SERPINE3A8MV23 424 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 RPL36A-HNRNPH2H7BZ11 118 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SULT1C2O00338 296 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 YIF1AO95070 293 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 CLDN1O95832 211 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 IGKV1D-12P01611 117 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SOD3P08294 240 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 RRASP10301 218 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 SNCAP37840 140 aa4.61□□□□□ -1.67
VPS13C-209ENST00000560637 DLX5P56178 289 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms