RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 KBTBD11-OT1A0A1B0GTJ5 212 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 CLDN34H7C241 214 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 LDLRAD4O15165 306 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 RAB6AP20340 208 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 GZMHP20718 246 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 CHATP28329 748 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 GLP1RP43220 463 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 SCAND1P57086 179 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 HES5Q5TA89 166 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 RUSC1-AS1Q66K80 236 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 SIGIRRQ6IA17 410 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 OR10K2Q6IF99 312 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 HCP5Q6MZN7 132 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 TRAT1Q6PIZ9 186 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 LDLRAD3Q86YD5 345 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 PIP4P2Q8N4L2 257 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 FAM89BQ8N5H3 189 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 OR11H6Q8NGC7 330 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 OR10A7Q8NGE5 316 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 OR56B1Q8NGI3 324 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 LPAR5Q9H1C0 372 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 LIN7BQ9HAP6 207 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 ETAA1Q9NY74 926 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 ZNF581Q9P0T4 197 aa10.62□□□□□ -0.71
NEDD8-208ENST00000560427 A0A087X0M5 115 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 A0A1B0GX30 115 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 IL1AP01583 271 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 FBP1P09467 338 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 CGB3P0DN86 165 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 CGB7P0DN87 165 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 SDC2P34741 201 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 SAA4P35542 130 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 CLDN12P56749 244 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 KLRD1Q13241 179 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 C2orf76Q3KRA6 126 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 TMEM30BQ3MIR4 351 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 C6orf183Q5T699 404 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 SFXN4Q6P4A7 337 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 ZNF782Q6ZMW2 699 aaPredicted RBP10.61□□□□□ -0.71
NEDD8-208ENST00000560427 ZNF554Q86TJ5 538 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 RTN4RL2Q86UN3 420 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 NR2C2APQ86WQ0 139 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 CROCCP3Q8IVE0 287 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 BCL6BQ8N143 479 aaPredicted RBP10.61□□□□□ -0.71
NEDD8-208ENST00000560427 TMEM86BQ8N661 226 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 SIGLECL1Q8N7X8 197 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 OR13A1Q8NGR1 328 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 ZNF48Q96MX3 618 aaPredicted RBP10.61□□□□□ -0.71
NEDD8-208ENST00000560427 CENPOQ9BU64 300 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 TMEM133Q9H2Q1 129 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 ING3Q9NXR8 418 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 CALYQ9NYX4 217 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 RAB22AQ9UL26 194 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 HSF4Q9ULV5 492 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 FAM96BQ9Y3D0 163 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 TBL2Q9Y4P3 447 aaKnown RBP10.61□□□□□ -0.71
NEDD8-208ENST00000560427 MXRA5Q9NR99 2828 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 DSCAML1Q8TD84 2053 aa10.61□□□□□ -0.71
NEDD8-208ENST00000560427 TMEM272A0A1B0GTI8 110 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 MEIOCA2RUB1 952 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 POM121CA8CG34 1229 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 ODF3BA8MYP8 253 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 NPIPB11E5RHQ5 1161 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 TRIM77I1YAP6 450 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 ORC5O43913 435 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 PAHP00439 452 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 MT-ND4P03905 459 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 COX7A1P24310 79 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 CDK2P24941 298 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 CD34P28906 385 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 C17orf58Q2M2W7 97 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 DEFB112Q30KQ8 113 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 NKAPLQ5M9Q1 402 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 ZNF626Q68DY1 528 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 SLC16A12Q6ZSM3 486 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 PDZD9Q8IXQ8 264 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 PNKDQ8N490 385 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 TMEM158Q8WZ71 300 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 ZDHHC16Q969W1 377 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 NICN1Q9BSH3 213 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 CLEC7AQ9BXN2 247 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 RIMS4Q9H426 269 aaPredicted RBP10.6□□□□□ -0.71
NEDD8-208ENST00000560427 KCNK15Q9H427 330 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 POMT1Q9Y6A1 747 aa10.6□□□□□ -0.71
NEDD8-208ENST00000560427 A0A0A6YYD4 124 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 IGHV2-26A0A0B4J1V2 119 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 A0A0U1RQK1 487 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 MEX3AA1L020 520 aaKnown RBP10.59□□□□□ -0.71
NEDD8-208ENST00000560427 METTL21EPA6NDL7 271 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 FOXI3A8MTJ6 420 aaPredicted RBP10.59□□□□□ -0.71
NEDD8-208ENST00000560427 SCGNO76038 276 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 VENTXO95231 258 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 BLVRBP30043 206 aaPredicted RBP10.59□□□□□ -0.71
NEDD8-208ENST00000560427 DLX1P56177 255 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 LGALS4P56470 323 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 BAMBIQ13145 260 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 ARL6IP1Q15041 203 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 AANATQ16613 207 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 MINOS1Q5TGZ0 78 aa10.59□□□□□ -0.71
NEDD8-208ENST00000560427 PRAMEF5Q5TYX0 476 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms