RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 IGHV3OR16-10A0A075B7F0 116 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 MEIKINA0A087WXM9 373 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 TRAV40A0A0B4J280 105 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 TMEM30CPA0ZSE6 113 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 FUOMA2VDF0 154 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 C17orf98A8MV24 154 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 ZNF728P0DKX0 622 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 IGHV4-38-2P0DP08 117 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 KLRD1Q13241 179 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 OLFML2AQ68BL7 652 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 Q6ZPA2 131 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 ZNF714Q96N38 554 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 PECRQ9BY49 303 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 NCOR1P1Q9H4R4 102 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 SPATA2Q9UM82 520 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 KCNK7Q9Y2U2 307 aa17.85■□□□□ 0.45
SNX1-210ENST00000560260 TRGV10A0A0A0MS01 117 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 TMEM127O75204 238 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 CRLF1O75462 422 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 MT-ND4P03905 459 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 CGB3P0DN86 165 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 CGB7P0DN87 165 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 HOXB4P17483 251 aaPredicted RBP17.84■□□□□ 0.45
SNX1-210ENST00000560260 GDNFP39905 211 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 GLP1RP43220 463 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 RBM39Q14498 530 aaKnown RBP17.84■□□□□ 0.45
SNX1-210ENST00000560260 TRAPPC6BQ86SZ2 158 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 CMTM4Q8IZR5 234 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 OR10R2Q8NGX6 335 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 MRPL30Q8TCC3 161 aaKnown RBP17.84■□□□□ 0.45
SNX1-210ENST00000560260 MRGPRDQ8TDS7 321 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 ATG5Q9H1Y0 275 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 CDC42EP3Q9UKI2 254 aa17.84■□□□□ 0.45
SNX1-210ENST00000560260 UBE2J1Q9Y385 318 aaPredicted RBP17.84■□□□□ 0.45
SNX1-210ENST00000560260 KIAA2026Q5HYC2 2103 aa17.83■□□□□ 0.45
SNX1-210ENST00000560260 MMP23AO75900 390 aa17.83■□□□□ 0.44
SNX1-210ENST00000560260 C17orf58Q2M2W7 97 aa17.83■□□□□ 0.44
SNX1-210ENST00000560260 HCP5Q6MZN7 132 aa17.83■□□□□ 0.44
SNX1-210ENST00000560260 ZNF782Q6ZMW2 699 aaPredicted RBP17.83■□□□□ 0.44
SNX1-210ENST00000560260 DYNC2LI1Q8TCX1 351 aa17.83■□□□□ 0.44
SNX1-210ENST00000560260 CCDC107Q8WV48 283 aa17.83■□□□□ 0.44
SNX1-210ENST00000560260 HDHD3Q9BSH5 251 aaPredicted RBP17.83■□□□□ 0.44
SNX1-210ENST00000560260 PLEKHJ1Q9NW61 149 aa17.83■□□□□ 0.44
SNX1-210ENST00000560260 HSF4Q9ULV5 492 aa17.83■□□□□ 0.44
SNX1-210ENST00000560260 RNASEK-C17orf49H0YIS7 233 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 H3BUI4 141 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 MFNGO00587 321 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 NOL3O60936 208 aaKnown RBP17.82■□□□□ 0.44
SNX1-210ENST00000560260 HNF1AP20823 631 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 PRTN3P24158 256 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 RORCP51449 518 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 PRAMEF5Q5TYX0 476 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 BAIAP2L2Q6UXY1 529 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 C1orf122Q6ZSJ8 110 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 Q6ZTK2 550 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 PDZD9Q8IXQ8 264 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 OR4K15Q8NH41 348 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 LHX4Q969G2 390 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 KCTD12Q96CX2 325 aaKnown RBP17.82■□□□□ 0.44
SNX1-210ENST00000560260 BEX2Q9BXY8 128 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 METTL8Q9H825 291 aaKnown RBP17.82■□□□□ 0.44
SNX1-210ENST00000560260 UNKLQ9H9P5 680 aaKnown RBP17.82■□□□□ 0.44
SNX1-210ENST00000560260 TAS2R3Q9NYW6 316 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 OR6C3Q9NZP0 311 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 AK3Q9UIJ7 227 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 MXRA5Q9NR99 2828 aa17.82■□□□□ 0.44
SNX1-210ENST00000560260 CENPVL3A0A0U1RRI6 287 aa17.81■□□□□ 0.44
SNX1-210ENST00000560260 A0A1W2PPH5 198 aa17.81■□□□□ 0.44
SNX1-210ENST00000560260 HIST1H1DP16402 221 aaKnown RBP17.81■□□□□ 0.44
SNX1-210ENST00000560260 SSTR5P35346 364 aa17.81■□□□□ 0.44
SNX1-210ENST00000560260 CHRFAM7AQ494W8 412 aa17.81■□□□□ 0.44
SNX1-210ENST00000560260 RUSC1-AS1Q66K80 236 aa17.81■□□□□ 0.44
SNX1-210ENST00000560260 C5orf24Q7Z6I8 188 aa17.81■□□□□ 0.44
SNX1-210ENST00000560260 NANPQ8TBE9 248 aa17.81■□□□□ 0.44
SNX1-210ENST00000560260 RAB3CQ96E17 227 aa17.81■□□□□ 0.44
SNX1-210ENST00000560260 ZMAT3Q9HA38 289 aaKnown RBP17.81■□□□□ 0.44
SNX1-210ENST00000560260 CALYQ9NYX4 217 aa17.81■□□□□ 0.44
SNX1-210ENST00000560260 ELF5Q9UKW6 265 aaPredicted RBP17.81■□□□□ 0.44
SNX1-210ENST00000560260 SOX21Q9Y651 276 aaPredicted RBP17.81■□□□□ 0.44
SNX1-210ENST00000560260 CUBNO60494 3623 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 METTL21EPA6NDL7 271 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 CCDC160A6NGH7 325 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 CA11O75493 328 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 CLPXO76031 633 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 NAPSAO96009 420 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 RBP4P02753 201 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 IGHV1-8P0DP01 117 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 GNB3P16520 340 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 OMGP23515 440 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 SRP14P37108 136 aaKnown RBP17.8■□□□□ 0.44
SNX1-210ENST00000560260 UTF1Q5T230 341 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 PNKDQ8N490 385 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 SAMD12Q8N8I0 201 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 UBALD1Q8TB05 177 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 COMMD3Q9UBI1 195 aa17.8■□□□□ 0.44
SNX1-210ENST00000560260 A0A075B6Q4 140 aa17.79■□□□□ 0.44
SNX1-210ENST00000560260 KBTBD11-OT1A0A1B0GTJ5 212 aa17.79■□□□□ 0.44
SNX1-210ENST00000560260 ZNF729A6NN14 1252 aaPredicted RBP17.79■□□□□ 0.44
SNX1-210ENST00000560260 C15orf65H3BRN8 121 aa17.79■□□□□ 0.44
SNX1-210ENST00000560260 ZNF182P17025 639 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms