RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SPATA2Q9UM82 520 aa8.31□□□□□ -1.08
USP3-216ENST00000559873 YLPM1P49750 1951 aaKnown RBP8.3□□□□□ -1.08
USP3-216ENST00000559873 ZNF729A6NN14 1252 aaPredicted RBP8.3□□□□□ -1.08
USP3-216ENST00000559873 POM121CA8CG34 1229 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 SERPINE3A8MV23 424 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 H3BMQ9 156 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 ZNF182P17025 639 aaPredicted RBP8.3□□□□□ -1.08
USP3-216ENST00000559873 GLIPR1P48060 266 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 ERVFRD-1P60508 538 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 ARF6P62330 175 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 ZNF273Q14593 569 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 GPR157Q5UAW9 335 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 RSBN1Q5VWQ0 802 aaPredicted RBP8.3□□□□□ -1.08
USP3-216ENST00000559873 TMEM200BQ69YZ2 307 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 ZNF497Q6ZNH5 498 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 Q6ZTK2 550 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 Q71RC1 249 aaPredicted RBP8.3□□□□□ -1.08
USP3-216ENST00000559873 SAMD12Q8N8I0 201 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 OR10R2Q8NGX6 335 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 PLPPR1Q8TBJ4 325 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 CMTM3Q96MX0 182 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 PCGF1Q9BSM1 259 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 SIRPDQ9H106 197 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 CHMP1AQ9HD42 196 aaPredicted RBP8.3□□□□□ -1.08
USP3-216ENST00000559873 C12orf4Q9NQ89 552 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 DIABLOQ9NR28 239 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 KCNIP1Q9NZI2 227 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 CCDC59Q9P031 241 aaKnown RBP8.3□□□□□ -1.08
USP3-216ENST00000559873 MGAT4AQ9UM21 535 aa8.3□□□□□ -1.08
USP3-216ENST00000559873 A0A0A6YYD4 124 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 TRAV40A0A0B4J280 105 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 UBE2QL1A1L167 161 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 INAFM1C9JVW0 142 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 SOCS1O15524 211 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 PAHP00439 452 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 CD3GP09693 182 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 SRD5A1P18405 259 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 PRTN3P24158 256 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 EFNB2P52799 333 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 BPIFB3P59826 476 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 SPCS2Q15005 226 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 TMEM30BQ3MIR4 351 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 SIGIRRQ6IA17 410 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 OR52W1Q6IF63 320 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 C6orf201Q7Z4U5 140 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 VMO1Q7Z5L0 202 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 ZNF554Q86TJ5 538 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 GAPTQ8N292 157 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 CORO2AQ92828 525 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 S100A16Q96FQ6 103 aaKnown RBP8.29□□□□□ -1.08
USP3-216ENST00000559873 ARHGAP5-AS1Q96IT6 56 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 SULT4A1Q9BR01 284 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 HEXA-AS1Q9H8Q6 139 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 OPN4Q9UHM6 478 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 ADAM30Q9UKF2 790 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 TRAPPC2LQ9UL33 140 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 CEPT1Q9Y6K0 416 aa8.29□□□□□ -1.08
USP3-216ENST00000559873 A0A075B6Q4 140 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 KBTBD11-OT1A0A1B0GTJ5 212 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 FOXI3A8MTJ6 420 aaPredicted RBP8.28□□□□□ -1.08
USP3-216ENST00000559873 C17orf98A8MV24 154 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 RAB27BO00194 218 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 SPINT2O43291 252 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 ORC5O43913 435 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 APOA1P02647 267 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 GSTP1P09211 210 aaKnown RBP8.28□□□□□ -1.08
USP3-216ENST00000559873 MMP9P14780 707 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 HIST1H1DP16402 221 aaKnown RBP8.28□□□□□ -1.08
USP3-216ENST00000559873 CCL3L1P16619 93 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 GZMHP20718 246 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 TALDO1P37837 337 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 MNDAP41218 407 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 PITPNAQ00169 270 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 ARFRP1Q13795 201 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 BRICD5Q6PL45 260 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 METAP1DQ6UB28 335 aaPredicted RBP8.28□□□□□ -1.08
USP3-216ENST00000559873 HEPN1Q6WQI6 88 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 OR10A7Q8NGE5 316 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 OR13D1Q8NGV5 346 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 OR5H6Q8NGV6 325 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 MRGPRDQ8TDS7 321 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 TBX15Q96SF7 602 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 CMSS1Q9BQ75 279 aaKnown RBP8.28□□□□□ -1.08
USP3-216ENST00000559873 FAAP24Q9BTP7 215 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 PECRQ9BY49 303 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 RBM38Q9H0Z9 239 aaKnown RBP8.28□□□□□ -1.08
USP3-216ENST00000559873 ABCG5Q9H222 651 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 UNKLQ9H9P5 680 aaKnown RBP8.28□□□□□ -1.08
USP3-216ENST00000559873 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.28□□□□□ -1.081e-7■□□□□ 9.5
USP3-216ENST00000559873 SIRT7Q9NRC8 400 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 CALYQ9NYX4 217 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 ZNF581Q9P0T4 197 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 COMMD3Q9UBI1 195 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 SESN1Q9Y6P5 492 aa8.28□□□□□ -1.08
USP3-216ENST00000559873 FN1P02751 2386 aaKnown RBP8.27□□□□□ -1.09
USP3-216ENST00000559873 ARHGAP32A7KAX9 2087 aa8.27□□□□□ -1.09
USP3-216ENST00000559873 TRBV6-6A0A0A6YYG2 114 aa8.27□□□□□ -1.09
USP3-216ENST00000559873 MFNGO00587 321 aa8.27□□□□□ -1.09
USP3-216ENST00000559873 CRLF1O75462 422 aa8.27□□□□□ -1.09
USP3-216ENST00000559873 MT-ND4P03905 459 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms