RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 POTEKPQ9BYX7 375 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 GABARAPL1Q9H0R8 117 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 TXNIPQ9H3M7 391 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 ASCL3Q9NQ33 180 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 DMAC2Q9NW81 257 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 C1orf109Q9NX04 203 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 IL37Q9NZH6 218 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 C14orf166Q9Y224 244 aaKnown RBP0.87□□□□□ -2.27
USP3-209ENST00000558925 POMPQ9Y244 141 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 C15orf41Q9Y2V0 281 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 DOCK6Q96HP0 2047 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 TRPM6Q9BX84 2022 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 CHD2O14647 1828 aaKnown RBP0.87□□□□□ -2.27
USP3-209ENST00000558925 ZNF407Q9C0G0 2248 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 KIAA0232Q92628 1395 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 LCTP09848 1927 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 IGHV1-45A0A0A0MS14 117 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 IGHV3-21A0A0B4J1V1 117 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 C9J4A7 227 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 F5H5P2 479 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 KLRC4-KLRK1H3BQV0 150 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 TOX3O15405 576 aaPredicted RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 CRXO43186 299 aaPredicted RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 ATP8B1O43520 1251 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 PSIP1O75475 530 aaKnown RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 RAB36O95755 333 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 IGHMP01871 453 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 PFN1P07737 140 aaKnown RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 PET100P0DJ07 73 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 INAFM2P0DMQ5 153 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 PVALBP20472 110 aaPredicted RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 PRPS1L1P21108 318 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 CD34P28906 385 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 ACTR1BP42025 376 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 SULT1A2P50226 295 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 ZNF83P51522 516 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 STC1P52823 247 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 DLX6P56179 175 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 RPS11P62280 158 aaKnown RBP eCLIP0.86□□□□□ -2.27
USP3-209ENST00000558925 ENDOGQ14249 297 aaKnown RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 C4orf26Q17RF5 130 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 GOLGA7BQ2TAP0 167 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 KRTAP25-1Q3LHN0 102 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 TTMPQ5BVD1 217 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 PDZD11Q5EBL8 140 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 MRPL2Q5T653 305 aaKnown RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 FAM162BQ5T6X4 162 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 TMEM215Q68D42 235 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 ZNF660Q6AZW8 331 aaPredicted RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 NIPAL1Q6NVV3 410 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 WDR59Q6PJI9 974 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 CYHR1Q6ZMK1 362 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 SSX7Q7RTT5 188 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 TCF23Q7RTU1 214 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 OLIG3Q7RTU3 272 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 MUC15Q8N387 334 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 SLC25A45Q8N413 288 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 YIPF7Q8N8F6 280 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 C1orf64Q8NEQ6 169 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 LFNGQ8NES3 379 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 SUN5Q8TC36 379 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 ZNF721Q8TF20 911 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 LRRC45Q96CN5 670 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 HBEGFQ99075 208 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 ZNF251Q9BRH9 671 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 C1orf50Q9BV19 199 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 METTL8Q9H825 291 aaKnown RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 TRIM45Q9H8W5 580 aaPredicted RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 WDR54Q9H977 334 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 INIPQ9NRY2 104 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 IMP3Q9NV31 184 aaKnown RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 ZNHIT6Q9NWK9 470 aaKnown RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 OR5V1Q9UGF6 321 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 HMGXB4Q9UGU5 601 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 OR51B4Q9Y5P0 310 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 PUS1Q9Y606 427 aaKnown RBP eCLIP0.86□□□□□ -2.27
USP3-209ENST00000558925 R4GN34 69 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 U3KQK5 164 aa0.86□□□□□ -2.27
USP3-209ENST00000558925 ZNF638Q14966 1978 aaKnown RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 BAZ1BQ9UIG0 1483 aaKnown RBP0.86□□□□□ -2.27
USP3-209ENST00000558925 POLR3AO14802 1390 aaPredicted RBP0.85□□□□□ -2.27
USP3-209ENST00000558925 COL1A2P08123 1366 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 RAB3GAP2Q9H2M9 1393 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 PLXNB1O43157 2135 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 IGKV1-12A0A0C4DH73 117 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 C1orf232A0A0U1RR37 186 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 A0A1W2PNN7 141 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 TMEM213A2RRL7 107 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 OR5H14A6NHG9 310 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 GOLGA6L10A6NI86 522 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 TMEM250H0YL14 139 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 H3BMM0 161 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 H3BQ85 93 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 K7ERS5 55 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 ATRNO75882 1429 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 KLHL2O95198 593 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 YEATS4O95619 227 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 IGKV1D-12P01611 117 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 ORM1P02763 201 aa0.85□□□□□ -2.27
USP3-209ENST00000558925 TPM3P06753 285 aa0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms