RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PRSS33Q8NF86 280 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 AQP10Q96PS8 301 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 PRRX2Q99811 253 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 SYT3Q9BQG1 590 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 ADAT1Q9BUB4 502 aaKnown RBP9.03□□□□□ -0.96
CUX1-217ENST00000558836 RSRP1Q9BUV0 290 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 TMEM231Q9H6L2 316 aa9.03□□□□□ -0.96
CUX1-217ENST00000558836 UBE2J1Q9Y385 318 aaPredicted RBP9.03□□□□□ -0.96
CUX1-217ENST00000558836 COL12A1Q99715 3063 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 MED19A0JLT2 244 aaPredicted RBP9.02□□□□□ -0.97
CUX1-217ENST00000558836 NKX2-6A6NCS4 301 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 OR5B21A6NL26 309 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 TRDCB7Z8K6 153 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 WNT9BO14905 357 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 PET100P0DJ07 73 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 MPV17LQ2QL34 196 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 PXDC1Q5TGL8 231 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 FAM53AQ6NSI3 398 aaPredicted RBP9.02□□□□□ -0.97
CUX1-217ENST00000558836 DPPA2Q7Z7J5 298 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 SAXO1Q8IYX7 474 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 BPIFCQ8NFQ6 507 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 GALNT14Q96FL9 552 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 USB1Q9BQ65 265 aaKnown RBP9.02□□□□□ -0.97
CUX1-217ENST00000558836 MAGT1Q9H0U3 335 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 OR1A1Q9P1Q5 309 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 DKK4Q9UBT3 224 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 FBXL17Q9UF56 701 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 ZNF705EA8MWA4 302 aaPredicted RBP9.02□□□□□ -0.97
CUX1-217ENST00000558836 AGPAT2O15120 278 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 WDR1O75083 606 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 LYL1P12980 280 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 HOXC12P31275 282 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 IL24Q13007 206 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 MRPL49Q13405 166 aaKnown RBP9.02□□□□□ -0.97
CUX1-217ENST00000558836 SMCO1Q147U7 214 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 IGFL2Q6UWQ7 119 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 FBXW12Q6X9E4 464 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 PLPPR1Q8TBJ4 325 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 C18orf12Q96KH6 178 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 HRH4Q9H3N8 390 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 MED9Q9NWA0 146 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 ERRFI1Q9UJM3 462 aaPredicted RBP9.02□□□□□ -0.97
CUX1-217ENST00000558836 TUBD1Q9UJT1 453 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 ATP23Q9Y6H3 246 aa9.02□□□□□ -0.97
CUX1-217ENST00000558836 KLK10O43240 276 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 NXPH2O95156 264 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 OR2H2O95918 312 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 DEFA5Q01523 94 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 NHLH2Q02577 135 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 IZUMO4Q1ZYL8 232 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 PCSK4Q6UW60 755 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 HSD17B13Q7Z5P4 300 aaPredicted RBP9.01□□□□□ -0.97
CUX1-217ENST00000558836 WDR31Q8NA23 367 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 OR51H1Q8NH63 302 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 STOML3Q8TAV4 291 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 SARAFQ96BY9 339 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 PHYHIPLQ96FC7 376 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 RTL8AQ9BWD3 113 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 TAF9BQ9HBM6 251 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 CHD3Q12873 2000 aaKnown RBP9.01□□□□□ -0.97
CUX1-217ENST00000558836 PROB1E7EW31 1015 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 AQP7O14520 342 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 FAM157CP0CG43 387 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 M6PRP20645 277 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 OR8G1Q15617 311 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 ACSF3Q4G176 576 aaPredicted RBP9.01□□□□□ -0.97
CUX1-217ENST00000558836 SEM1Q6ZVN7 128 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 LGI3Q8N145 548 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 SUCNR1Q9BXA5 334 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 OPA3Q9H6K4 179 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 PLA2G2EQ9NZK7 142 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 ZDHHC8Q9ULC8 765 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 AMDHD2Q9Y303 409 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 POLEQ07864 2286 aa9.01□□□□□ -0.97
CUX1-217ENST00000558836 PKDREJQ9NTG1 2253 aa9□□□□□ -0.97
CUX1-217ENST00000558836 TMEM238LA0A1B0GVL6 79 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A10PA6NDY2 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A18PA6NE21 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A16PA6NEW6 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A20PA6NIJ5 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A8PA6NJQ4 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A7PA6NKC0 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 A6NLC8 198 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A22PA8MWA6 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A12PA8MX19 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A5PA8MXJ8 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A23PA8MXZ1 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 J3QT63 122 aa9□□□□□ -0.97
CUX1-217ENST00000558836 TSPAN4O14817 238 aa9□□□□□ -0.97
CUX1-217ENST00000558836 MLNRO43193 412 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A15PP0C7V4 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A13PP0C7W8 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A14PP0C7W9 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 FAM90A24PP0C7X0 464 aa9□□□□□ -0.97
CUX1-217ENST00000558836 CECR9P0C854 216 aa9□□□□□ -0.97
CUX1-217ENST00000558836 OMGP23515 440 aa9□□□□□ -0.97
CUX1-217ENST00000558836 PRAMEF6Q5VXH4 476 aa9□□□□□ -0.97
CUX1-217ENST00000558836 Q6P435 159 aa9□□□□□ -0.97
CUX1-217ENST00000558836 ZNF695Q8IW36 515 aa9□□□□□ -0.97
CUX1-217ENST00000558836 NUP50Q9UKX7 468 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms