RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ZNF695Q8IW36 515 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 OR4D5Q8NGN0 318 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 OR4A4PQ8NGN8 299 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 GMPPAQ96IJ6 420 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-206ENST00000558338 TMEM56Q96MV1 263 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 GINS3Q9BRX5 216 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 RTL8AQ9BWD3 113 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 SLC25A31Q9H0C2 315 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 HRH4Q9H3N8 390 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 POLDIP2Q9Y2S7 368 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 UBE2J1Q9Y385 318 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-206ENST00000558338 TMEM56-RWDD3S4R434 201 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 AQP7O14520 342 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 WNT2P09544 360 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 SELEP16581 610 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 KCNJ3P48549 501 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 HLA-DRB3P79483 266 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 SPEM2Q0P670 501 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 C4orf17Q53FE4 359 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 SPIN3Q5JUX0 258 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 FIP1L1Q6UN15 594 aaKnown RBP6.22□□□□□ -1.41
VPS13C-206ENST00000558338 BTNL8Q6UX41 500 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 P4HA3Q7Z4N8 544 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-206ENST00000558338 TBC1D26Q86UD7 250 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 FAM58AQ8N1B3 248 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 SLC35G3Q8N808 338 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 BCL2L2Q92843 193 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-206ENST00000558338 WDYHV1Q96HA8 205 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 KIRREL1Q96J84 757 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 NRIP2Q9BQI9 281 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 FGF23Q9GZV9 251 aaPredicted RBP6.22□□□□□ -1.41
VPS13C-206ENST00000558338 ZDHHC11Q9H8X9 412 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 UQCC1Q9NVA1 299 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 TREM2Q9NZC2 230 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 MTCH1Q9NZJ7 389 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 NDRG3Q9UGV2 375 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 IL17BQ9UHF5 180 aa6.22□□□□□ -1.41
VPS13C-206ENST00000558338 PURGQ9UJV8 347 aaKnown RBP6.22□□□□□ -1.41
VPS13C-206ENST00000558338 RCL1Q9Y2P8 373 aaKnown RBP6.22□□□□□ -1.41
VPS13C-206ENST00000558338 ARHGAP21Q5T5U3 1957 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 CLEC18AA5D8T8 446 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 ZNF503-AS2A6NEH8 195 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 NPIPB11E5RHQ5 1161 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 H0Y980 276 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 TOR1AO14656 332 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 PITX3O75364 302 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 CCL2P13500 99 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 RCC1P18754 421 aaPredicted RBP6.21□□□□□ -1.42
VPS13C-206ENST00000558338 UCP1P25874 307 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 GNRHRP30968 328 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 LPAR6P43657 344 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 NKX2-1P43699 371 aaPredicted RBP6.21□□□□□ -1.42
VPS13C-206ENST00000558338 DVL1P1P54792 670 aaPredicted RBP6.21□□□□□ -1.42
VPS13C-206ENST00000558338 VAMP2P63027 116 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 SRSF2Q01130 221 aaKnown RBP6.21□□□□□ -1.42
VPS13C-206ENST00000558338 DAZAP2Q15038 168 aaPredicted RBP6.21□□□□□ -1.42
VPS13C-206ENST00000558338 GABRA6Q16445 453 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 IGSF11Q5DX21 431 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 SHEQ5VZ18 495 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 ZNF880Q6PDB4 577 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 HAGHLQ6PII5 290 aaPredicted RBP6.21□□□□□ -1.42
VPS13C-206ENST00000558338 ATRAIDQ6UW56 229 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 MEX3BQ6ZN04 569 aaKnown RBP6.21□□□□□ -1.42
VPS13C-206ENST00000558338 Q6ZPA2 131 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 Q6ZRG5 221 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 BOLLQ8N9W6 283 aaKnown RBP6.21□□□□□ -1.42
VPS13C-206ENST00000558338 SUMF2Q8NBJ7 301 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 CLEC18CQ8NCF0 446 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 LFNGQ8NES3 379 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 OR5D13Q8NGL4 314 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 OR11L1Q8NGX0 322 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 LYPD6BQ8NI32 183 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 SECTM1Q8WVN6 248 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 TP53RKQ96S44 253 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 CABLES2Q9BTV7 478 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 ZNF552Q9H707 407 aaPredicted RBP6.21□□□□□ -1.42
VPS13C-206ENST00000558338 CDH20Q9HBT6 801 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 PRSS50Q9UI38 385 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 SH3BGRL2Q9UJC5 107 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 LIPGQ9Y5X9 500 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 KPTNQ9Y664 436 aa6.21□□□□□ -1.42
VPS13C-206ENST00000558338 TMEM210A6NLX4 147 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 TRIM77I1YAP6 450 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 TSPAN15O95858 294 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 IL18BPO95998 194 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 NGFP01138 241 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 SPP1P10451 314 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 SLC25A6P12236 298 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 CTRB1P17538 263 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 VDAC1P21796 283 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 WNT5AP41221 380 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 FOXG1P55316 489 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-206ENST00000558338 UBE2NP61088 152 aaKnown RBP6.2□□□□□ -1.42
VPS13C-206ENST00000558338 FLI1Q01543 452 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-206ENST00000558338 BAXQ07812 192 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 OR8G1Q15617 311 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 C3AR1Q16581 482 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 FAM76BQ5HYJ3 339 aa6.2□□□□□ -1.42
VPS13C-206ENST00000558338 CTRB2Q6GPI1 263 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms