RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, human

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTF1-204	ENST00000558117	TBL1XR1	Q9BZK7	514 aa		4.19	□□□□□ -1.74
RTF1-204	ENST00000558117	NMUR2	Q9GZQ4	415 aa		4.19	□□□□□ -1.74
RTF1-204	ENST00000558117	SP140L	Q9H930	580 aa		4.19	□□□□□ -1.74
RTF1-204	ENST00000558117	NANOG	Q9H9S0	305 aa		4.19	□□□□□ -1.74
RTF1-204	ENST00000558117	SPATA2	Q9UM82	520 aa		4.19	□□□□□ -1.74
RTF1-204	ENST00000558117	ACOT9	Q9Y305	439 aa		4.19	□□□□□ -1.74
RTF1-204	ENST00000558117	PEX16	Q9Y5Y5	336 aa		4.19	□□□□□ -1.74
RTF1-204	ENST00000558117		A0A0A6YYD5	115 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	GMNC	A6NCL1	334 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117		H3BUX3	64 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	PLPP1	O14494	284 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	PLIN3	O60664	434 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	LYPLA1	O75608	230 aa	Predicted RBP	4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	UTS2	O95399	124 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	IGHV1-46	P01743	117 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	IFNA6	P05013	189 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	BPGM	P07738	259 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	HPGD	P15428	266 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	TAC1	P20366	129 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	OGN	P20774	298 aa	Known RBP	4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	CYLC2	Q14093	348 aa	Predicted RBP	4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	OR4D1	Q15615	310 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	LTB4R	Q15722	352 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	LY6E	Q16553	131 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	C18orf21	Q32NC0	220 aa	Predicted RBP	4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	RNF165	Q6ZSG1	346 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	MDP1	Q86V88	176 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	ZNF584	Q8IVC4	421 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	NUDCD3	Q8IVD9	361 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	PDZD9	Q8IXQ8	264 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	LINC01561	Q8N1V8	128 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	CCNYL1	Q8N7R7	359 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	CLHC1	Q8NHS4	586 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	ZNF596	Q8TC21	504 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	CD300LF	Q8TDQ1	290 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	OR51B5	Q9H339	312 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117		Q9HAA7	133 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	NMRAL1	Q9HBL8	299 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	SLCO1B3	Q9NPD5	702 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	NUDT15	Q9NV35	164 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	FGFR1OP2	Q9NVK5	253 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	SENP1	Q9P0U3	644 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	DCDC2	Q9UHG0	476 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	CES1P1	Q9UKY3	287 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	FLVCR1	Q9Y5Y0	555 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	FSIP2	Q5CZC0	6907 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	PKHD1L1	Q86WI1	4243 aa		4.18	□□□□□ -1.74
RTF1-204	ENST00000558117	PHOX2A	O14813	284 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	PFDN6	O15212	129 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	RTL8C	O15255	209 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	SYNGR1	O43759	233 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	ENSA	O43768	121 aa	Known RBP	4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	OR2J3	O76001	311 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	DIRAS1	O95057	198 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	KLHL2	O95198	593 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	TMEM50A	O95807	157 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	IGHG4	P01861	327 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	SERPINE2	P07093	398 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	MYL2	P10916	166 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	UMPS	P11172	480 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	BCKDHA	P12694	445 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	ZNF250	P15622	560 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	ZNF43	P17038	809 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	LCN1	P31025	176 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	SAA4	P35542	130 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	MDH2	P40926	338 aa	Known RBP	4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	MAGEA12	P43365	314 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	SELENBP1	Q13228	472 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	STX3	Q13277	289 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	TSN	Q15631	228 aa	Known RBP	4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	ATP6AP1L	Q52LC2	224 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	FAM45BP	Q6NSW5	357 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	TMPPE	Q6ZT21	453 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	ZNF283	Q8N7M2	679 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	GATS	Q8NAP1	163 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	ICA1L	Q8NDH6	482 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	PIGX	Q8TBF5	258 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	FAM45A	Q8TCE6	357 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	ITLN1	Q8WWA0	313 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	ASB9	Q96DX5	294 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	CHMP6	Q96FZ7	201 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	PPP1R36	Q96LQ0	422 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	ZNF75A	Q96N20	296 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	OR5B2	Q96R09	309 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	P2RX4	Q99571	388 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	NIPSNAP3B	Q9BS92	247 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	C20orf27	Q9GZN8	174 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	TMEM106B	Q9NUM4	274 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	TAS2R13	Q9NYV9	303 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	MARCO	Q9UEW3	520 aa	Predicted RBP	4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	AK6	Q9Y3D8	172 aa	Known RBP	4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	GMPPB	Q9Y5P6	360 aa		4.17	□□□□□ -1.74
RTF1-204	ENST00000558117	TEX48	A0A1B0GUV7	120 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	SERPINE3	A8MV23	424 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	NDUFAB1	O14561	156 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	SUPT3H	O75486	399 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	WISP3	O95389	354 aa	Predicted RBP	4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	GFAP	P14136	432 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	ZNF3	P17036	446 aa		4.16	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms