RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 SNRNP70P08621 437 aaKnown RBP11.65□□□□□ -0.54
SHMT2-235ENST00000557740 LIMS3P0CW19 117 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 LIMS4P0CW20 117 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 CGB3P0DN86 165 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 CGB7P0DN87 165 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 IGLL1P15814 213 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 SSTR5P35346 364 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 GNG10P50151 68 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 SLC35A2P78381 396 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 PAX5Q02548 391 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 HES1Q14469 280 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 DDI2Q5TDH0 399 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 FOXB2Q5VYV0 432 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 THNSL2Q86YJ6 484 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 RFESDQ8TAC1 157 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 LEAP2Q969E1 77 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 S100A13Q99584 98 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 DPCDQ9BVM2 203 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-235ENST00000557740 METTL9Q9H1A3 318 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 LINC00574Q9H8X3 128 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 AURKAIP1Q9NWT8 199 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-235ENST00000557740 PSG11Q9UQ72 335 aa11.65□□□□□ -0.54
SHMT2-235ENST00000557740 IRGMA1A4Y4 181 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 OR7C1O76099 320 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-235ENST00000557740 CDRT1O95170 752 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 CSTBP04080 98 aaKnown RBP11.64□□□□□ -0.55
SHMT2-235ENST00000557740 TMEM11P17152 192 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 MYL12AP19105 171 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 DCKP27707 260 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 RAB7AP51149 207 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 RBM11P57052 281 aaKnown RBP11.64□□□□□ -0.55
SHMT2-235ENST00000557740 SMN1Q16637 294 aaKnown RBP11.64□□□□□ -0.55
SHMT2-235ENST00000557740 XAF1Q6GPH4 301 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 C10orf99Q6UWK7 81 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 ASCL4Q6XD76 172 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 OSR2Q8N2R0 312 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 DRAM1Q8N682 238 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 SUMF2Q8NBJ7 301 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 WFDC9Q8NEX5 89 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 Q8NFD4 153 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 OR10A7Q8NGE5 316 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 OR10X1Q8NGY0 326 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 FGF20Q9NP95 211 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-235ENST00000557740 TMEM138Q9NPI0 162 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 PAK1IP1Q9NWT1 392 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-235ENST00000557740 SMPD3Q9NY59 655 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-235ENST00000557740 IL36GQ9NZH8 169 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 ING4Q9UNL4 249 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 ST3GAL6Q9Y274 331 aa11.64□□□□□ -0.55
SHMT2-235ENST00000557740 TRAV39A0A0B4J263 110 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 A0A1W2PPI3 338 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 TMEM30CPA0ZSE6 113 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 PSMB11A5LHX3 300 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 NPIPB11E5RHQ5 1161 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 WBP4O75554 376 aaKnown RBP11.63□□□□□ -0.55
SHMT2-235ENST00000557740 BAG2O95816 211 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 SERPINA2P20848 420 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 ZNF93P35789 620 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-235ENST00000557740 ETV1P50549 477 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 RIPK1Q13546 671 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 NHLRC3Q5JS37 347 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 OR2G6Q5TZ20 316 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 SLC16A12Q6ZSM3 486 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 LINC00596Q86U02 117 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 OR8H3Q8N146 312 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 OR52N1Q8NH53 320 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 NEK7Q8TDX7 302 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 RCC1LQ96I51 464 aaKnown RBP11.63□□□□□ -0.55
SHMT2-235ENST00000557740 RDH12Q96NR8 316 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 IFT22Q9H7X7 185 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 CKLFQ9UBR5 152 aa11.63□□□□□ -0.55
SHMT2-235ENST00000557740 FAM90A18PA6NE21 464 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 FAM90A16PA6NEW6 464 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 FAM90A20PA6NIJ5 464 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 FAM90A9PA6NNJ1 464 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 FAM90A12PA8MX19 464 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 FAM90A5PA8MXJ8 464 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 HSD17B6O14756 317 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 FAM90A15PP0C7V4 464 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 FAM90A13PP0C7W8 464 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 FAM90A14PP0C7W9 464 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 FAM90A24PP0C7X0 464 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 BDKRB2P30411 391 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 MED21Q13503 144 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 HNF4GQ14541 408 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 ATAD3CQ5T2N8 411 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 SMIM19Q96E16 107 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 ZNF581Q9P0T4 197 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 ZNF281Q9Y2X9 895 aa11.62□□□□□ -0.55
SHMT2-235ENST00000557740 EXOSC1Q9Y3B2 195 aaKnown RBP11.62□□□□□ -0.55
SHMT2-235ENST00000557740 A0A1W2PPE3 182 aa11.61□□□□□ -0.55
SHMT2-235ENST00000557740 GEMIN2O14893 280 aaKnown RBP11.61□□□□□ -0.55
SHMT2-235ENST00000557740 FGF16O43320 207 aa11.61□□□□□ -0.55
SHMT2-235ENST00000557740 ZNF780AO75290 641 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-235ENST00000557740 DUS4LO95620 317 aaKnown RBP11.61□□□□□ -0.55
SHMT2-235ENST00000557740 IGKV1D-33P01593 117 aa11.61□□□□□ -0.55
SHMT2-235ENST00000557740 IGKV1-33P01594 117 aa11.61□□□□□ -0.55
SHMT2-235ENST00000557740 GZMHP20718 246 aa11.61□□□□□ -0.55
SHMT2-235ENST00000557740 DIAPH2-AS1Q14236 149 aa11.61□□□□□ -0.55
SHMT2-235ENST00000557740 SLC22A6Q4U2R8 563 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms