RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SSTR5P35346 364 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 FABP5Q01469 135 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 GPR50Q13585 617 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 FAM189A2Q15884 450 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 SSX1Q16384 188 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 HIST2H2BDQ6DRA6 164 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 SIGIRRQ6IA17 410 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 C5orf24Q7Z6I8 188 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 RTN4RL2Q86UN3 420 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 TMEM219Q86XT9 240 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 OR4P4Q8NGL7 312 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 OR4F5Q8NH21 305 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 LINC01006Q8NI28 216 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 NDNFQ8TB73 568 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 CCDC107Q8WV48 283 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 KIRREL1Q96J84 757 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 SELENOIQ9C0D9 397 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 GAL3ST2Q9H3Q3 398 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 IFT22Q9H7X7 185 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 TCF7L1Q9HCS4 588 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 CALYQ9NYX4 217 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 WNK1Q9H4A3 2382 aa9.35□□□□□ -0.91
CCDC88C-208ENST00000554165 ZNF729A6NN14 1252 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 CD24P25063 80 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 EMX1Q04741 257 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 MLLT11Q13015 90 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 TBCEQ15813 527 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 HSD17B12Q53GQ0 312 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 OLFML2AQ68BL7 652 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 DHRS7BQ6IAN0 325 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 SLC35E4Q6ICL7 350 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 GDPGP1Q6ZNW5 385 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 CDH26Q8IXH8 852 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 OR5R1Q8NH85 324 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 WFDC12Q8WWY7 111 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 Q96M66 194 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 UQCC2Q9BRT2 126 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 BARHL1Q9BZE3 327 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 BEX1Q9HBH7 125 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 ISYNA1Q9NPH2 558 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 ACOT13Q9NPJ3 140 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 OR6C3Q9NZP0 311 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 TBL2Q9Y4P3 447 aaKnown RBP9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 MMP24Q9Y5R2 645 aa9.34□□□□□ -0.91
CCDC88C-208ENST00000554165 A0A1W2PPE3 182 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 UBE2QL1A1L167 161 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 CLPSL1A2RUU4 121 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 VGLL3A8MV65 326 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 DENRO43583 198 aaKnown RBP9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 ZNF780AO75290 641 aaPredicted RBP9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 MPIG6BO95866 241 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 IGLV1-47P01700 117 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 MT-ND4P03905 459 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 VSIG8P0DPA2 414 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 CD34P28906 385 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 GPR176Q14439 515 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 RBM39Q14498 530 aaKnown RBP9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 P2RY14Q15391 338 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 MPV17LQ2QL34 196 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 C1orf100Q5SVJ3 147 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 RAB12Q6IQ22 244 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 NKAIN3Q8N8D7 197 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 NEK7Q8TDX7 302 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 PHYHIPQ92561 330 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 MALSU1Q96EH3 234 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 NICN1Q9BSH3 213 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 IDI2-AS1Q9NZ38 188 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 RCC2Q9P258 522 aaKnown RBP9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 AK6Q9Y3D8 172 aaKnown RBP9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 PEX16Q9Y5Y5 336 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 VWFP04275 2813 aa9.33□□□□□ -0.92
CCDC88C-208ENST00000554165 TRRAPQ9Y4A5 3859 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 SHISA3A0PJX4 238 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 TMEM30CPA0ZSE6 113 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 A6NDX4 124 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 POM121CA8CG34 1229 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 NPIPB11E5RHQ5 1161 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 C15orf65H3BRN8 121 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 IL1AP01583 271 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 CD37P11049 281 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 CALRP27797 417 aaKnown RBP9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 HTR1DP28221 377 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 CLDN12P56749 244 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 PROK1P58294 105 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 QRFPP83859 136 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 PAX5Q02548 391 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 PLA2G7Q13093 441 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 UNC119Q13432 240 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 DIAPH2-AS1Q14236 149 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 HABP2Q14520 560 aaPredicted RBP9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 AANATQ16613 207 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 HLA-DRB5Q30154 266 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 MINOS1Q5TGZ0 78 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 SHISA2Q6UWI4 295 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 ZNF497Q6ZNH5 498 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 ZNF367Q7RTV3 350 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 LINC00596Q86U02 117 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 SPARTQ8N0X7 666 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 ZNF565Q8N9K5 539 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 OR4K15Q8NH41 348 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms