RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 ARHGDIBP52566 201 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 FABP5Q01469 135 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 FOXL1Q12952 345 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 INSL4Q14641 139 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 SSX1Q16384 188 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 LIAT1Q6ZQX7 453 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 OR2W3Q7Z3T1 314 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 GCDHQ92947 438 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 Q96M66 194 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 SELENOIQ9C0D9 397 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 RAB18Q9NP72 206 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 KIF25Q9UIL4 384 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 VPREB3Q9UKI3 123 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 SVEP1Q4LDE5 3571 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 MXRA5Q9NR99 2828 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 A0A087X0M5 115 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 IGHV2-26A0A0B4J1V2 119 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 TRAV1-2A0A0B4J238 106 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 KBTBD11-OT1A0A1B0GTJ5 212 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 A0A1B0GUS0 222 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 A0A1B0GX30 115 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 PDCD6O75340 191 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 IL1AP01583 271 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 ARG1P05089 322 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 HKR1P10072 659 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 GZMHP20718 246 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 CDK2P24941 298 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 CFPP27918 469 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 CEACAM3P40198 252 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 GP2P55259 537 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 SRSF2Q01130 221 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 RAB11BQ15907 218 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 TAF9Q16594 264 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 LRRC75BQ2VPJ9 315 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 C6orf183Q5T699 404 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 C12orf54Q6X4T0 127 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 DTX3Q8N9I9 347 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 NKX3-1Q99801 234 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 URM1Q9BTM9 101 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 PPIL3Q9H2H8 161 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 LINC00574Q9H8X3 128 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 CALYQ9NYX4 217 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 STUB1Q9UNE7 303 aa11.71□□□□□ -0.53
CCDC88C-207ENST00000554051 COL6A5A8TX70 2615 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 A0A1W2PP11 408 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 AIPO00170 330 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 ARSBP15848 533 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 FUT3P21217 361 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 FGF9P31371 208 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 DYNC1I2Q13409 638 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 RAB12Q6IQ22 244 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 SLC16A12Q6ZSM3 486 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 ZNF554Q86TJ5 538 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 MALSU1Q96EH3 234 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 NEDD4LQ96PU5 975 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 TM2D1Q9BX74 207 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 MEGF9Q9H1U4 602 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 ETAA1Q9NY74 926 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 FBLN5Q9UBX5 448 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 AMMECR1Q9Y4X0 333 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 V9GY05 133 aa11.7□□□□□ -0.54
CCDC88C-207ENST00000554051 A0A1W2PRD5 423 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 A0A1W2PRF3 423 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 A0A1W2PRM7 423 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 VGLL3A8MV65 326 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 ORC5O43913 435 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 NDUFA7O95182 113 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 MPIG6BO95866 241 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 VSIG8P0DPA2 414 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 HTR1DP28221 377 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 PRRX1P54821 245 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 DLX1P56177 255 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 RPS27AP62979 156 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 TIMM50Q3ZCQ8 353 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 Q3ZCU0 254 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 SYT6Q5T7P8 510 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 PRAMEF5Q5TYX0 476 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 ZNF497Q6ZNH5 498 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 TMEM104Q8NE00 496 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 OR4F5Q8NH21 305 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 PLPPR1Q8TBJ4 325 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 FAM46BQ96A09 425 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 DUX5Q96PT3 197 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 CHIAQ9BZP6 476 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 BANF2Q9H503 90 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 ABCB10Q9NRK6 738 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 ING3Q9NXR8 418 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 STEAP1Q9UHE8 339 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 SSR3Q9UNL2 185 aa11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 SOX21Q9Y651 276 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-207ENST00000554051 A0A087WXM4 84 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 TMEM14DPA8MWL7 114 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 OOSP1A8MZH6 123 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 NPIPB11E5RHQ5 1161 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 TOR1AO14656 332 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 IGHV4-59P01825 116 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 DYNLT3P51808 116 aa11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 PRB3Q04118 309 aaPredicted RBP11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 DHRS7BQ6IAN0 325 aaPredicted RBP11.68□□□□□ -0.54
CCDC88C-207ENST00000554051 CCDC144NLQ6NUI1 221 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms