RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	KIAA1217	Q5T5P2	1943 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	NTN1	O95631	604 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	IGHV4-34	P06331	123 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	IL9	P15248	144 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	NHLH1	Q02575	133 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	NHLH2	Q02577	135 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	PMS2P11	Q13670	270 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	TSPO2	Q5TGU0	170 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	SLC35E3	Q7Z769	313 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	TMEM52	Q8NDY8	209 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	BLNK	Q8WV28	456 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	ADAT3	Q96EY9	351 aa	Predicted RBP	10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	MS4A5	Q9H3V2	200 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	ORM1	P02763	201 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	TTR	P02766	147 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	PGA4	P0DJD7	388 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	PGA5	P0DJD9	388 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	LYZ	P61626	148 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	RND1	Q92730	232 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	TNFSF18	Q9UNG2	199 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	UBR3	Q6ZT12	1888 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289		A0A1W2PPC1	479 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289		M0R296	226 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	LGALS7	P47929	136 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	PET117	Q6UWS5	81 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	C11orf42	Q8N5U0	333 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	FBLIM1	Q8WUP2	373 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	HEXA-AS1	Q9H8Q6	139 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	SAP30L	Q9HAJ7	183 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	PILRA	Q9UKJ1	303 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289		R4GN57	208 aa		10.1	□□□□□ -0.79
SYNE2-208	ENST00000553289	CTXND1	A0A1B0GTU2	59 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289		A0A1W2PNV4	684 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	CDRT15L2	A8MXV6	281 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	TMPRSS2	O15393	492 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	RD3L	P0DJH9	198 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	KIR3DL2	P43630	455 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	RBM11	P57052	281 aa	Known RBP	10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	DCAF10	Q5QP82	559 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	LYRM7	Q5U5X0	104 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	OR2I1P	Q8NGU4	316 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	TINAG	Q9UJW2	476 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	TRBV5-5	A0A0J9YX44	114 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	IGSF23	A1L1A6	192 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	PITX3	O75364	302 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	DEDD	O75618	318 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	ORM2	P19652	201 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	ACP1	P24666	158 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289		Q1RN00	199 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	SPINK9	Q5DT21	86 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	ABHD3	Q8WU67	409 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	ZNF501	Q96CX3	271 aa	Predicted RBP	10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	OR10C1	Q96KK4	312 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	UCN2	Q96RP3	112 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	TRIP11	Q15643	1979 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	COL5A3	P25940	1745 aa	Predicted RBP	10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	CRYBA1	P05813	215 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	CRISP2	P16562	243 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	MEOX2	P50222	304 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	ROM1	Q03395	351 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	SLC23A3	Q6PIS1	610 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	MOGAT3	Q86VF5	341 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	TGIF2LY	Q8IUE0	185 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	TGIF2LX	Q8IUE1	241 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	DTX4	Q9Y2E6	619 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	OR5AL1	P0C617	328 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	CD81	P60033	236 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	OR10A7	Q8NGE5	316 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	OR1B1	Q8NGR6	318 aa		10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	XIRP1	Q702N8	1843 aa	Known RBP	10.09	□□□□□ -0.79
SYNE2-208	ENST00000553289	NKX2-6	A6NCS4	301 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A10P	A6NDY2	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A18P	A6NE21	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A16P	A6NEW6	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A20P	A6NIJ5	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A8P	A6NJQ4	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A7P	A6NKC0	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A22P	A8MWA6	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A12P	A8MX19	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A5P	A8MXJ8	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A23P	A8MXZ1	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	CXorf1	O96002	111 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	IGKV1D-16	P01601	117 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A15P	P0C7V4	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A13P	P0C7W8	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A14P	P0C7W9	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FAM90A24P	P0C7X0	464 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	TMEM50B	P56557	158 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	GSX1	Q9H4S2	264 aa	Predicted RBP	10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	SLC2A8	Q9NY64	477 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	NPTN	Q9Y639	398 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	TSPAN2	O60636	221 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	NEURL1	O76050	574 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	CD300C	Q08708	224 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	KHDC3L	Q587J8	217 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	SPNS3	Q6ZMD2	512 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	LYZL2	Q7Z4W2	148 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	DOLPP1	Q86YN1	238 aa		10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	ADAD2	Q8NCV1	583 aa	Known RBP	10.08	□□□□□ -0.8
SYNE2-208	ENST00000553289	FLYWCH2	Q96CP2	140 aa	Known RBP	10.08	□□□□□ -0.8

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