RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 LGI3Q8N145 548 aa4.19□□□□□ -1.74
LIMA1-214ENST00000552783 LFNGQ8NES3 379 aa4.19□□□□□ -1.74
LIMA1-214ENST00000552783 OR14L1PQ8NHC6 308 aa4.19□□□□□ -1.74
LIMA1-214ENST00000552783 RCC1LQ96I51 464 aaKnown RBP4.19□□□□□ -1.74
LIMA1-214ENST00000552783 HS3ST6Q96QI5 342 aa4.19□□□□□ -1.74
LIMA1-214ENST00000552783 SYT3Q9BQG1 590 aa4.19□□□□□ -1.74
LIMA1-214ENST00000552783 OR51B6Q9H340 312 aa4.19□□□□□ -1.74
LIMA1-214ENST00000552783 CDH20Q9HBT6 801 aa4.19□□□□□ -1.74
LIMA1-214ENST00000552783 IGKV1D-13A0A0B4J2D9 117 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 TP53I11O14683 189 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 NUPR1O60356 82 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 TIAF1O95411 115 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 IGLV3-1P01715 115 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 HSPB1P04792 205 aaKnown RBP4.18□□□□□ -1.74
LIMA1-214ENST00000552783 CELA2AP08217 269 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 PATE4P0C8F1 98 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 IGKV1-13P0DP09 117 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 TUBG1P23258 451 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 GNRHRP30968 328 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 WNT5AP41221 380 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 ALDH3B1P43353 468 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 MTCP1P56278 107 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 EXT1Q16394 746 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 TDRG1Q3Y452 100 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 HIST2H3PS2Q5TEC6 136 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF468Q5VIY5 522 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-214ENST00000552783 SLC25A47Q6Q0C1 308 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 BTNL3Q6UXE8 466 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 THNSL2Q86YJ6 484 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 CMTM1Q8IZ96 169 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 LRTM2Q8N967 370 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 NOXO1Q8NFA2 376 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 OR5R1Q8NH85 324 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 SIGLEC12Q96PQ1 595 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 HIST1H2AAQ96QV6 131 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 CABLES2Q9BTV7 478 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 RPRMQ9NS64 109 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 GAB2Q9UQC2 676 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 EXPH5Q8NEV8 1989 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 CACNA1HO95180 2353 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 LOC102723971A0A1B0GUV8 181 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 ETV2O00321 342 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-214ENST00000552783 HSPB6O14558 160 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 CHST1O43916 411 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 NPSP0C0P6 89 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 DEFA4P12838 97 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 COL8A2P25067 703 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 CEACAM6P40199 344 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 NKX2-1P43699 371 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-214ENST00000552783 RND2P52198 227 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 ELLP55199 621 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-214ENST00000552783 NXPH1P58417 271 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 ARL16Q0P5N6 197 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 TMEM267Q0VDI3 215 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-214ENST00000552783 GNMTQ14749 295 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 PPA1Q15181 289 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 THEM4Q5T1C6 240 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 RTL6Q6ICC9 239 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 SLC35E3Q7Z769 313 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 TMEM183AQ8IXX5 376 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 C1orf87Q8N0U7 546 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 SLC25A45Q8N413 288 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 RNASE11Q8TAA1 199 aaKnown RBP4.18□□□□□ -1.74
LIMA1-214ENST00000552783 PHF7Q9BWX1 381 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-214ENST00000552783 ULBP2Q9BZM5 246 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 LYRM2Q9NU23 88 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-214ENST00000552783 NECAP2Q9NVZ3 263 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 DCAF16Q9NXF7 216 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 ALKBH4Q9NXW9 302 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 C19orf25Q9UFG5 118 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-214ENST00000552783 POLEQ07864 2286 aa4.18□□□□□ -1.74
LIMA1-214ENST00000552783 C3orf85A0A1B0GTC6 90 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 XKRY2A2RUG3 117 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 MPPED1O15442 326 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 PITX3O75364 302 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 IFNA10P01566 189 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 GALNSP34059 522 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 SPIN3Q5JUX0 258 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF818PQ6ZRF7 136 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 YRDCQ86U90 279 aaKnown RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF100Q8IYN0 542 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 PLPP5Q8NEB5 264 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 OR1P1Q8NH06 330 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 GATAD1Q8WUU5 269 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 TMEM37Q8WXS4 190 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 PRRG4Q9BZD6 226 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 SDF2L1Q9HCN8 221 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 SIRT7Q9NRC8 400 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 SLC7A10Q9NS82 523 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 TNRC18O15417 2968 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 FREM1Q5H8C1 2179 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 NBASA2RRP1 2371 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 CLDN34H7C241 214 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 DHRS3O75911 302 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF25P17030 456 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 NPBWR2P48146 333 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 CCL7P80098 99 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 CFHR1Q03591 330 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ENDOGQ14249 297 aaKnown RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 SLC10A1Q14973 349 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms