RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 VEGFCP49767 419 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 ACTR3P61158 418 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 GNB1P62873 340 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 ZNF616Q08AN1 781 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 BNIP1Q12981 228 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 SRSF7Q16629 238 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS29-208ENST00000550267 Q6P435 159 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 BCDIN3DQ7Z5W3 292 aaKnown RBP8.13□□□□□ -1.11
VPS29-208ENST00000550267 MOB3BQ86TA1 216 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 SLC35F2Q8IXU6 374 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 DEFB107AQ8IZN7 70 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 Q8N6K4 173 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 OR13A1Q8NGR1 328 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 HAVCR2Q8TDQ0 301 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 HSPB9Q9BQS6 159 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 COMMD4Q9H0A8 199 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 SLC25A19Q9HC21 320 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 CALYQ9NYX4 217 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 IDI2-AS1Q9NZ38 188 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 OR6C3Q9NZP0 311 aa8.13□□□□□ -1.11
VPS29-208ENST00000550267 IGHV1-3A0A0C4DH29 117 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 IGKV1-9A0A0C4DH69 117 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 ZNF670-ZNF695F2Z2N8 137 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 SLC33A1O00400 549 aaPredicted RBP8.12□□□□□ -1.11
VPS29-208ENST00000550267 HSD17B6O14756 317 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 MPZL2O60487 215 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 MTCP1P56278 107 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 ZNF816Q0VGE8 651 aaPredicted RBP8.12□□□□□ -1.11
VPS29-208ENST00000550267 PDZK1IP1Q13113 114 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 FAM98BQ52LJ0 330 aaKnown RBP8.12□□□□□ -1.11
VPS29-208ENST00000550267 SSX6Q7RTT6 188 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 CATSPERDQ86XM0 798 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 IZUMO1Q8IYV9 350 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 HS3ST5Q8IZT8 346 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 YIPF7Q8N8F6 280 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 DNAAF1Q8NEP3 725 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 OR10X1Q8NGY0 326 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 OR2T10Q8NGZ9 312 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 RFESDQ8TAC1 157 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 MYOZ3Q8TDC0 251 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 RBMXL1Q96E39 390 aaKnown RBP8.12□□□□□ -1.11
VPS29-208ENST00000550267 KCTD7Q96MP8 289 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 RASL11BQ9BPW5 248 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 ADI1Q9BV57 179 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 OSBPL10Q9BXB5 764 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 KLK15Q9H2R5 256 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 ADGRL4Q9HBW9 690 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 PLSCR3Q9NRY6 295 aa8.12□□□□□ -1.11
VPS29-208ENST00000550267 MEIKINA0A087WXM9 373 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 LOC107986453A0A1B0GWG9 222 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 HSPB6O14558 160 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 DEGS1O15121 323 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 CST1P01037 141 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 IL1AP01583 271 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 GAPDHP04406 335 aaKnown RBP8.11□□□□□ -1.11
VPS29-208ENST00000550267 IGHV4-30-4P0DP06 118 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 ATF1P18846 271 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 PRKACGP22612 351 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 RUNX1Q01196 453 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 GABPB1Q06547 395 aaPredicted RBP8.11□□□□□ -1.11
VPS29-208ENST00000550267 KIAA0141Q14154 515 aaPredicted RBP8.11□□□□□ -1.11
VPS29-208ENST00000550267 GK3PQ14409 553 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 ZNF491Q8N8L2 437 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 OR5D18Q8NGL1 313 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 PP6455Q8WZ26 134 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 DLX4Q92988 240 aaPredicted RBP8.11□□□□□ -1.11
VPS29-208ENST00000550267 ADAT3Q96EY9 351 aaPredicted RBP8.11□□□□□ -1.11
VPS29-208ENST00000550267 UBE2E2Q96LR5 201 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 S1PR3Q99500 378 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 MNTQ99583 582 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 TBX5Q99593 518 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 ELAC2Q9BQ52 826 aaKnown RBP8.11□□□□□ -1.11
VPS29-208ENST00000550267 TEX12Q9BXU0 123 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 ZNF556Q9HAH1 456 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 CLN6Q9NWW5 311 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 KIF25Q9UIL4 384 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 HERC2O95714 4834 aa8.11□□□□□ -1.11
VPS29-208ENST00000550267 ZNF736B4DX44 427 aaPredicted RBP8.1□□□□□ -1.11
VPS29-208ENST00000550267 NPIPB11E5RHQ5 1161 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 M0R129 80 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 PRKYO43930 277 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 KDM4BO94953 1096 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 IGF1P05019 195 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 KRT8P05787 483 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 PRKACBP22694 351 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 C21orf33P30042 268 aaPredicted RBP8.1□□□□□ -1.11
VPS29-208ENST00000550267 HTR1FP30939 366 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 SLURP1P55000 103 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 CDK5R1Q15078 307 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 SPATS1Q496A3 300 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 LHFPL2Q6ZUX7 228 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 DHFR2Q86XF0 187 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 RDH10Q8IZV5 341 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 Q8N1Y9 231 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 PRSS35Q8N3Z0 413 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 ZNF565Q8N9K5 539 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 CHST4Q8NCG5 386 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 CCDC54Q8NEL0 328 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 OR51T1Q8NGJ9 327 aa8.1□□□□□ -1.11
VPS29-208ENST00000550267 OR6Q1Q8NGQ2 317 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms