RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 BMP5P22003 454 aa9.4□□□□□ -0.91
CUX1-212ENST00000547394 MRPL49Q13405 166 aaKnown RBP9.4□□□□□ -0.91
CUX1-212ENST00000547394 SURF2Q15527 256 aaPredicted RBP9.4□□□□□ -0.91
CUX1-212ENST00000547394 PRSS54Q6PEW0 395 aa9.4□□□□□ -0.91
CUX1-212ENST00000547394 FBXW12Q6X9E4 464 aa9.4□□□□□ -0.91
CUX1-212ENST00000547394 PIK3IP1Q96FE7 263 aa9.4□□□□□ -0.91
CUX1-212ENST00000547394 RTL8AQ9BWD3 113 aa9.4□□□□□ -0.91
CUX1-212ENST00000547394 CYTL1Q9NRR1 136 aa9.4□□□□□ -0.91
CUX1-212ENST00000547394 METRNQ9UJH8 293 aa9.4□□□□□ -0.91
CUX1-212ENST00000547394 KCNIP3Q9Y2W7 256 aa9.4□□□□□ -0.91
CUX1-212ENST00000547394 SVEP1Q4LDE5 3571 aa9.4□□□□□ -0.91
CUX1-212ENST00000547394 CHD3Q12873 2000 aaKnown RBP9.4□□□□□ -0.91
CUX1-212ENST00000547394 IGHV1-18A0A0C4DH31 117 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 MFSD2BA6NFX1 497 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 OR5B21A6NL26 309 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 J3QT63 122 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 NUPL2O15504 423 aaKnown RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 PSPNO60542 156 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 ID4P47928 161 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 UBA52P62987 128 aaKnown RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 TUSC1Q2TAM9 212 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 ZNF474Q6S9Z5 364 aaPredicted RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 ZNF565Q8N9K5 539 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 ERGIC1Q969X5 290 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 MSI2Q96DH6 328 aaKnown RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 NARS2Q96I59 477 aaKnown RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 RCC2Q9P258 522 aaKnown RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 KIF25Q9UIL4 384 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 ERRFI1Q9UJM3 462 aaPredicted RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 RFNGQ9Y644 331 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 NKX2-6A6NCS4 301 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 M0R1B8 84 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 CEACAM4O75871 244 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 IFNA21P01568 189 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 EPHA1P21709 976 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 CYCSP99999 105 aaKnown RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 TAGLNQ01995 201 aaKnown RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 IL15RAQ13261 267 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 SNTB1Q13884 538 aaKnown RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 ZNF345Q14585 488 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 PRR30Q53SZ7 412 aaPredicted RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 Q6P435 159 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 Q8NFD4 153 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 S100PBPQ96BU1 408 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 ABHD17AQ96GS6 310 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 DECR2Q9NUI1 292 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 UBE2J1Q9Y385 318 aaPredicted RBP9.39□□□□□ -0.91
CUX1-212ENST00000547394 ABCA4P78363 2273 aa9.39□□□□□ -0.91
CUX1-212ENST00000547394 C3orf85A0A1B0GTC6 90 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 TRDCB7Z8K6 153 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 MPPED1O15442 326 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 IGHV3-13P01766 116 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 IGHV3-7P01780 117 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 ZNF16P17020 682 aaPredicted RBP9.38□□□□□ -0.91
CUX1-212ENST00000547394 NBL1P41271 181 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 FAM27E3Q08E93 113 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 IL24Q13007 206 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 LTC4SQ16873 150 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 DPPA2Q7Z7J5 298 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 CISD2Q8N5K1 135 aaKnown RBP9.38□□□□□ -0.91
CUX1-212ENST00000547394 OR1S2Q8NGQ3 325 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 CNTNAP3BQ96NU0 1288 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 USB1Q9BQ65 265 aaKnown RBP9.38□□□□□ -0.91
CUX1-212ENST00000547394 SYT3Q9BQG1 590 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 DCTN5Q9BTE1 182 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 COL25A1Q9BXS0 654 aaPredicted RBP9.38□□□□□ -0.91
CUX1-212ENST00000547394 CNTNAP3Q9BZ76 1288 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 TMEM231Q9H6L2 316 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 PFDN2Q9UHV9 154 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 TRAPPC2LQ9UL33 140 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 RNF150Q9ULK6 438 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 IGHV2OR16-5A0A0B4J2B6 119 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 IGKV3-15P01624 115 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 HKR1P10072 659 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 OMGP23515 440 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 AESQ08117 197 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 RTP5Q14D33 572 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 FAM201AQ5SY85 155 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 INO80CQ6PI98 192 aaPredicted RBP9.38□□□□□ -0.91
CUX1-212ENST00000547394 PCSK4Q6UW60 755 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 LIAT1Q6ZQX7 453 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 BHLHA15Q7RTS1 189 aaPredicted RBP9.38□□□□□ -0.91
CUX1-212ENST00000547394 ASB13Q8WXK3 278 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 PLSCR2Q9NRY7 297 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 PPP1R3CQ9UQK1 317 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 AGPAT2O15120 278 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 HSPA12AO43301 675 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 CGAP01215 116 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 CBR1P16152 277 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 COX5AP20674 150 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 RPL12P30050 165 aaKnown RBP9.38□□□□□ -0.91
CUX1-212ENST00000547394 LINC00205P59089 165 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 SRSF3P84103 164 aaKnown RBP9.38□□□□□ -0.91
CUX1-212ENST00000547394 BTN1A1Q13410 526 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 MPV17LQ2QL34 196 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 OR2B11Q5JQS5 317 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 SAXO1Q8IYX7 474 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 GLRX2Q9NS18 164 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 TMEM100Q9NV29 134 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 TAS2R3Q9NYW6 316 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms