RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SULT1A2P50226 295 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 EIF2S3LQ2VIR3 472 aaKnown RBP8.43□□□□□ -1.06
SS18-205ENST00000542420 DMRTC2Q8IXT2 367 aaPredicted RBP8.43□□□□□ -1.06
SS18-205ENST00000542420 COMMD1Q8N668 190 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 OR4D5Q8NGN0 318 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 TOMM40LQ969M1 308 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 MRPL24Q96A35 216 aaKnown RBP8.43□□□□□ -1.06
SS18-205ENST00000542420 CDH20Q9HBT6 801 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 LPAR3Q9UBY5 353 aa8.43□□□□□ -1.06
SS18-205ENST00000542420 KNTC1P50748 2209 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 AHRRA9YTQ3 701 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 ST8SIA3O43173 380 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 SMPD2O60906 423 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 NGFP01138 241 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 MUC1P15941 1255 aaPredicted RBP8.42□□□□□ -1.06
SS18-205ENST00000542420 ADCYAP1P18509 176 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 PVALBP20472 110 aaPredicted RBP8.42□□□□□ -1.06
SS18-205ENST00000542420 UCP1P25874 307 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 RAB5CP51148 216 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 S100A10P60903 97 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 ERVK11-1P61568 191 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 HLA-DRB3P79483 266 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 MSMO1Q15800 293 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 BEX5Q5H9J7 111 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 SPIN3Q5JUX0 258 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 RNFT1Q5M7Z0 435 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 C10orf91Q5T1B1 145 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 C9orf135Q5VTT2 229 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 Q6ZPA2 131 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 SPAG16Q8N0X2 631 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 FAM216AQ8WUB2 273 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 AKR1E2Q96JD6 320 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 PARP11Q9NR21 331 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 BORCS7-ASMTA0A0B4J1R7 106 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 C5orf52A6NGY3 159 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 MSGN1A6NI15 193 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 ZNF891A8MT65 544 aaPredicted RBP8.42□□□□□ -1.06
SS18-205ENST00000542420 PRR33A8MZF0 331 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 H0Y980 276 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 WRBO00258 174 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 UBE2CO00762 179 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 SEC11BP0C7V7 166 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 PPP1CBP62140 327 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 C3orf36Q3SXR2 165 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 HIKESHIQ53FT3 197 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 CMTM1Q8IZ96 169 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 SUMF2Q8NBJ7 301 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 MRPL30Q8TCC3 161 aaKnown RBP8.42□□□□□ -1.06
SS18-205ENST00000542420 TAF9BQ9HBM6 251 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 GSKIPQ9P0R6 139 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 ZNF581Q9P0T4 197 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 AMDHD2Q9Y303 409 aa8.42□□□□□ -1.06
SS18-205ENST00000542420 USP34Q70CQ2 3546 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 DOCK7Q96N67 2140 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.41□□□□□ -1.06
SS18-205ENST00000542420 IGHV1-2P23083 117 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 FXYD4P59646 89 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 MZT1Q08AG7 82 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 PJVKQ0ZLH3 352 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 HABP2Q14520 560 aaPredicted RBP8.41□□□□□ -1.06
SS18-205ENST00000542420 ZNF146Q15072 292 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 GUCA2BQ16661 112 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 Q6P435 159 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 HAGHLQ6PII5 290 aaPredicted RBP8.41□□□□□ -1.06
SS18-205ENST00000542420 ZFP82Q8N141 532 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 OR5D13Q8NGL4 314 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 LYPD6BQ8NI32 183 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 CYYR1Q96J86 154 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 C11orf1Q9H5F2 150 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 CARHSP1Q9Y2V2 147 aaKnown RBP8.41□□□□□ -1.06
SS18-205ENST00000542420 ESPL1Q14674 2120 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 CNTRLQ7Z7A1 2325 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 A0A1B0GWJ7 208 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 PHF1O43189 567 aaPredicted RBP8.41□□□□□ -1.06
SS18-205ENST00000542420 CLN5O75503 358 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 IGKV3-15P01624 115 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 MBPP02686 304 aaPredicted RBP8.41□□□□□ -1.06
SS18-205ENST00000542420 PGA5P0DJD9 388 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 GNRHRP30968 328 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 SNRPEP62304 92 aaKnown RBP8.41□□□□□ -1.06
SS18-205ENST00000542420 GNMTQ14749 295 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 C3AR1Q16581 482 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 IGFL3Q6UXB1 125 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 H1FOOQ8IZA3 346 aaPredicted RBP8.41□□□□□ -1.06
SS18-205ENST00000542420 OR1S2Q8NGQ3 325 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 KIRREL1Q96J84 757 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 GINS3Q9BRX5 216 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 ADAT1Q9BUB4 502 aaKnown RBP8.41□□□□□ -1.06
SS18-205ENST00000542420 TOLLIPQ9H0E2 274 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 C12orf49Q9H741 205 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 DLL3Q9NYJ7 618 aa8.41□□□□□ -1.06
SS18-205ENST00000542420 NCOR1O75376 2440 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 SYNGR1O43759 233 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 SFTPCP11686 197 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 VDAC1P21796 283 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 CD200P41217 278 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 PRSS12P56730 875 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 AVPI1Q5T686 147 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 DEFB124Q8NES8 71 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 RXFP4Q8TDU9 374 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms