RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SELEP16581 610 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 S100A12P80511 92 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 SP6Q3SY56 376 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 UNQ6126/PRO20091Q6UXV3 157 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 C20orf204Q6ZNR8 217 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 TREM2Q9NZC2 230 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 GSKIPQ9P0R6 139 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 PTPRZ1P23471 2315 aaPredicted RBP11.71□□□□□ -0.53
RTN3-210ENST00000540798 DUSP1P28562 367 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 HOXA1P49639 335 aaPredicted RBP11.71□□□□□ -0.53
RTN3-210ENST00000540798 FOXF2Q12947 444 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 PCSK4Q6UW60 755 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 C5orf24Q7Z6I8 188 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 BAP18Q8IXM2 172 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 Q8IYB0 196 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 GAPTQ8N292 157 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 C17orf78Q8N4C9 275 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 ZADH2Q8N4Q0 377 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 CNEP1R1Q8N9A8 125 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 SCCPDHQ8NBX0 429 aa11.71□□□□□ -0.53
RTN3-210ENST00000540798 MPPED1O15442 326 aa11.71□□□□□ -0.54
RTN3-210ENST00000540798 PSG7Q13046 419 aa11.71□□□□□ -0.54
RTN3-210ENST00000540798 IGFBP7Q16270 282 aa11.71□□□□□ -0.54
RTN3-210ENST00000540798 LGI3Q8N145 548 aa11.71□□□□□ -0.54
RTN3-210ENST00000540798 C2CD4CQ8TF44 421 aa11.71□□□□□ -0.54
RTN3-210ENST00000540798 NRIP2Q9BQI9 281 aa11.71□□□□□ -0.54
RTN3-210ENST00000540798 CABLES2Q9BTV7 478 aa11.71□□□□□ -0.54
RTN3-210ENST00000540798 GSN-AS1Q9NRJ2 163 aa11.71□□□□□ -0.54
RTN3-210ENST00000540798 PIEZO1Q92508 2521 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 RIF1Q5UIP0 2472 aaKnown RBP11.7□□□□□ -0.54
RTN3-210ENST00000540798 A0A1B0GW55 424 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 MBD3L4A6NDZ8 208 aaPredicted RBP11.7□□□□□ -0.54
RTN3-210ENST00000540798 MBD3L3A6NE82 208 aaPredicted RBP11.7□□□□□ -0.54
RTN3-210ENST00000540798 MBD3L5A6NJ08 208 aaPredicted RBP11.7□□□□□ -0.54
RTN3-210ENST00000540798 IGLV1-44P01699 117 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 TK1P04183 234 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 DUX4L2P0CJ85 424 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 DUX4L3P0CJ86 424 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 DUX4L4P0CJ87 422 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 DUX4L5P0CJ88 424 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 DUX4L6P0CJ89 424 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 DUX4L7P0CJ90 424 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 PGA5P0DJD9 388 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 ALKBH6Q3KRA9 238 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 SEM1Q6ZVN7 128 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 LYZL2Q7Z4W2 148 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 MBD3L2Q8NHZ7 208 aaPredicted RBP11.7□□□□□ -0.54
RTN3-210ENST00000540798 TP53RKQ96S44 253 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 DUX4Q9UBX2 424 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 SESN1Q9Y6P5 492 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 TMEM210A6NLX4 147 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 TAAR5O14804 337 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 DIRAS3O95661 229 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 APOC3P02656 99 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 TUBG1P23258 451 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 NOVA1P51513 510 aaKnown RBP11.7□□□□□ -0.54
RTN3-210ENST00000540798 S100A10P60903 97 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 FAM219AQ8IW50 185 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 OR1J1Q8NGS3 322 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 TMEM56Q96MV1 263 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 ADAT1Q9BUB4 502 aaKnown RBP11.7□□□□□ -0.54
RTN3-210ENST00000540798 TUBG2Q9NRH3 451 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 POLDIP2Q9Y2S7 368 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 TMEM56-RWDD3S4R434 201 aa11.7□□□□□ -0.54
RTN3-210ENST00000540798 C3orf85A0A1B0GTC6 90 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 C1QTNF9BB2RNN3 333 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 KRBOX1C9JBD0 128 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 MDH2P40926 338 aaKnown RBP11.69□□□□□ -0.54
RTN3-210ENST00000540798 EIF2S3P41091 472 aaKnown RBP11.69□□□□□ -0.54
RTN3-210ENST00000540798 CLRN3Q8NCR9 226 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 OR5T2Q8NGG2 359 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 OR4A4PQ8NGN8 299 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 STARD4Q96DR4 205 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 TMEM222Q9H0R3 208 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 HES4Q9HCC6 221 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 FAM186AA6NE01 2351 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 NPIPB11E5RHQ5 1161 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 HSPB6O14558 160 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 MBPP02686 304 aaPredicted RBP11.69□□□□□ -0.54
RTN3-210ENST00000540798 SPINK2P20155 84 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 MPV17P39210 176 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 FLI1Q01543 452 aaPredicted RBP11.69□□□□□ -0.54
RTN3-210ENST00000540798 ZNF146Q15072 292 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 Q6ZS92 163 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 KLF14Q8TD94 323 aaPredicted RBP11.69□□□□□ -0.54
RTN3-210ENST00000540798 PRRX2Q99811 253 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 OBP2BQ9NPH6 170 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 ZNF71Q9NQZ8 489 aaPredicted RBP11.69□□□□□ -0.54
RTN3-210ENST00000540798 PCDHB10Q9UN67 800 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 TMED3Q9Y3Q3 217 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 CFAP47Q6ZTR5 3102 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 IGKV1D-13A0A0B4J2D9 117 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 A0A1B0GWJ7 208 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 C3orf80F5H4A9 247 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 IGKV1-13P0DP09 117 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 SRPXP78539 464 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 HLA-DRB3P79483 266 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 ZNF154Q13106 437 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 ZNF818PQ6ZRF7 136 aa11.69□□□□□ -0.54
RTN3-210ENST00000540798 FAM169BQ8N8A8 192 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms