RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 CADM1Q9BY67 442 aaKnown RBP4.84□□□□□ -1.63
CD44-237ENST00000534082 SEBOXQ9HB31 216 aaPredicted RBP4.84□□□□□ -1.63
CD44-237ENST00000534082 GPR84Q9NQS5 396 aa4.84□□□□□ -1.63
CD44-237ENST00000534082 PLA2G2DQ9UNK4 145 aa4.84□□□□□ -1.63
CD44-237ENST00000534082 PSG11Q9UQ72 335 aa4.84□□□□□ -1.63
CD44-237ENST00000534082 FOXA2Q9Y261 457 aaPredicted RBP4.84□□□□□ -1.63
CD44-237ENST00000534082 KBTBD11-OT1A0A1B0GTJ5 212 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 A0A1W2PPE3 182 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 FAM220BPB1ANY3 271 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 ZNF736B4DX44 427 aaPredicted RBP4.83□□□□□ -1.64
CD44-237ENST00000534082 E2F6O75461 281 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 DHRS3O75911 302 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 GAPDHP04406 335 aaKnown RBP4.83□□□□□ -1.64
CD44-237ENST00000534082 ZP3P21754 424 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 BLVRBP30043 206 aaPredicted RBP4.83□□□□□ -1.64
CD44-237ENST00000534082 BMI1P35226 326 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 GLP1RP43220 463 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 BLVRAP53004 296 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 SYNJ2BPP57105 145 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 TCTAP57738 103 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 CDC42P60953 191 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 BNIP1Q12981 228 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 KLF10Q13118 480 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 LTC4SQ16873 150 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 TMEM177Q53S58 311 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 C19orf54Q5BKX5 351 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 KRBOX4Q5JUW0 171 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 LINC01590Q5TEZ4 76 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 TMEM42Q69YG0 159 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 YIPF7Q8N8F6 280 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 OR8J3Q8NGG0 315 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 OR2K2Q8NGT1 345 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 OR51E1Q8TCB6 317 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 COQ2Q96H96 371 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 C16orf45Q96MC5 204 aaPredicted RBP4.83□□□□□ -1.64
CD44-237ENST00000534082 SPACA5Q96QH8 159 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 SH3GL1Q99961 368 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 CCDC28BQ9BUN5 200 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 KRTAP4-11Q9BYQ6 195 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 NMNAT2Q9BZQ4 307 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 RBFOX1Q9NWB1 397 aaKnown RBP4.83□□□□□ -1.64
CD44-237ENST00000534082 CALYQ9NYX4 217 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 SLC23A1Q9UHI7 598 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 ENPP4Q9Y6X5 453 aa4.83□□□□□ -1.64
CD44-237ENST00000534082 IGHV7-81A0A0B4J1V7 117 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 FAM230AA0A1W2PPH8 454 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 C16orf90A8MZG2 172 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 FXYD1O00168 92 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 RGS16O15492 202 aaPredicted RBP4.82□□□□□ -1.64
CD44-237ENST00000534082 ENTPD6O75354 484 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 IL1AP01583 271 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 IGLV3-1P01715 115 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 HLA-DRB1P01911 266 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 CSN3P07498 182 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 LYNP07948 512 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 H2AFXP16104 143 aaPredicted RBP4.82□□□□□ -1.64
CD44-237ENST00000534082 PRKACAP17612 351 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 CD1BP29016 333 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 TPPP2P59282 170 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 NDPQ00604 133 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 APOFQ13790 326 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 KLF5Q13887 457 aaPredicted RBP4.82□□□□□ -1.64
CD44-237ENST00000534082 CYLC2Q14093 348 aaPredicted RBP4.82□□□□□ -1.64
CD44-237ENST00000534082 ATXN7L3Q14CW9 347 aaPredicted RBP4.82□□□□□ -1.64
CD44-237ENST00000534082 ZNF146Q15072 292 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 MMDQ15546 238 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 SLC25A26Q70HW3 274 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 FKBP9P1Q75LS8 142 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 SHFQ7M4L6 423 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 SLC15A3Q8IY34 581 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 ZNF645Q8N7E2 425 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 OR2T12Q8NG77 320 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 OR52J3Q8NH60 311 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 C2CD4CQ8TF44 421 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 RTN4IP1Q8WWV3 396 aaPredicted RBP4.82□□□□□ -1.64
CD44-237ENST00000534082 TEAD3Q99594 435 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 FUZQ9BT04 418 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 PPIL3Q9H2H8 161 aaKnown RBP4.82□□□□□ -1.64
CD44-237ENST00000534082 EGLN3Q9H6Z9 239 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 RANGRFQ9HD47 186 aaPredicted RBP4.82□□□□□ -1.64
CD44-237ENST00000534082 EXOSC4Q9NPD3 245 aaKnown RBP4.82□□□□□ -1.64
CD44-237ENST00000534082 KRT84Q9NSB2 600 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 IDI2-AS1Q9NZ38 188 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 FBXL17Q9UF56 701 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 TP53TG1Q9Y2A0 90 aa4.82□□□□□ -1.64
CD44-237ENST00000534082 IGKV1-27A0A075B6S5 117 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 LOC102724200A0A096LPH7 203 aaPredicted RBP4.81□□□□□ -1.64
CD44-237ENST00000534082 TRBV2A0A0J9YWF9 115 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 A6NIN4 97 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 PRSS47A8MTI9 375 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 SPRY2O43597 315 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 DIRAS1O95057 198 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 OR2H2O95918 312 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 IFNA4P05014 189 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 CSN2P05814 226 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 RBMY1A1P0DJD3 496 aaKnown RBP4.81□□□□□ -1.64
CD44-237ENST00000534082 CALCBP10092 127 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 BCL3P20749 454 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 NANOS2P60321 138 aaKnown RBP4.81□□□□□ -1.64
CD44-237ENST00000534082 TRIM25Q14258 630 aaKnown RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms