RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 DPF1Q92782 380 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 ZNF649Q9BS31 505 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 NCOR1P1Q9H4R4 102 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 TAS2R4Q9NYW5 299 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 PSG11Q9UQ72 335 aa11.73□□□□□ -0.53
VPS28-215ENST00000531924 SERPINE3A8MV23 424 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 OR7C1O76099 320 aaPredicted RBP11.72□□□□□ -0.53
VPS28-215ENST00000531924 AMY1AP04745 511 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 AMY2AP04746 511 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 GABRB1P18505 474 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 RPL22L1Q6P5R6 122 aaKnown RBP11.72□□□□□ -0.53
VPS28-215ENST00000531924 SLC16A12Q6ZSM3 486 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 OR8H3Q8N146 312 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 ZNF555Q8NEP9 628 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 OR10A7Q8NGE5 316 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 NEK7Q8TDX7 302 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 DPCDQ9BVM2 203 aaPredicted RBP11.72□□□□□ -0.53
VPS28-215ENST00000531924 JAM3Q9BX67 310 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 GPR61Q9BZJ8 451 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 METTL9Q9H1A3 318 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 PAK1IP1Q9NWT1 392 aaPredicted RBP11.72□□□□□ -0.53
VPS28-215ENST00000531924 ST3GAL6Q9Y274 331 aa11.72□□□□□ -0.53
VPS28-215ENST00000531924 TMEM30CPA0ZSE6 113 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 NUDT19A8MXV4 375 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 E9PQ18 207 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 CDRT1O95170 752 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 GZMHP20718 246 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 ZNF93P35789 620 aaPredicted RBP11.71□□□□□ -0.53
VPS28-215ENST00000531924 GTF2A1P52655 376 aaPredicted RBP11.71□□□□□ -0.53
VPS28-215ENST00000531924 SLC35B1P78383 322 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 CCDC58Q4VC31 144 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 DEFB121Q5J5C9 76 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 UTF1Q5T230 341 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 DDI2Q5TDH0 399 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 C10orf99Q6UWK7 81 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 MOB3BQ86TA1 216 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 ZNF329Q86UD4 541 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 SUMF2Q8NBJ7 301 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 OR51A2Q8NGJ7 313 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 CHPT1Q8WUD6 406 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 TMEM106AQ96A25 262 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 TMEM138Q9NPI0 162 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 CKLFQ9UBR5 152 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 ZNF281Q9Y2X9 895 aa11.71□□□□□ -0.53
VPS28-215ENST00000531924 TRAV39A0A0B4J263 110 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 IRGMA1A4Y4 181 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 NPIPB11E5RHQ5 1161 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 BAG2O95816 211 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 IGKV1D-33P01593 117 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 IGKV1-33P01594 117 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 CGB3P0DN86 165 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 CGB7P0DN87 165 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 MYL12AP19105 171 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 SSTR5P35346 364 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 ATAD3CQ5T2N8 411 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 RSBN1Q5VWQ0 802 aaPredicted RBP11.7□□□□□ -0.54
VPS28-215ENST00000531924 FOXRED2Q8IWF2 684 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 STX19Q8N4C7 294 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 OR52N1Q8NH53 320 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 PLPPR1Q8TBJ4 325 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 SLC29A1Q99808 456 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 LINC00574Q9H8X3 128 aa11.7□□□□□ -0.54
VPS28-215ENST00000531924 MRPS18AQ9NVS2 196 aaKnown RBP11.7□□□□□ -0.54
VPS28-215ENST00000531924 CHCHD3Q9NX63 227 aaKnown RBP11.7□□□□□ -0.54
VPS28-215ENST00000531924 A0A1W2PPE3 182 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 A0A1W2PPI3 338 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 FAM90A18PA6NE21 464 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 FAM90A16PA6NEW6 464 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 FAM90A20PA6NIJ5 464 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 FAM90A9PA6NNJ1 464 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 NCBP2LA6PVI3 153 aaKnown RBP11.69□□□□□ -0.54
VPS28-215ENST00000531924 FAM90A12PA8MX19 464 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 FAM90A5PA8MXJ8 464 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 CCRL2O00421 344 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 SDCBPO00560 298 aaPredicted RBP11.69□□□□□ -0.54
VPS28-215ENST00000531924 ZNF780AO75290 641 aaPredicted RBP11.69□□□□□ -0.54
VPS28-215ENST00000531924 GAPDHP04406 335 aaKnown RBP11.69□□□□□ -0.54
VPS28-215ENST00000531924 FAM90A15PP0C7V4 464 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 FAM90A13PP0C7W8 464 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 FAM90A14PP0C7W9 464 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 FAM90A24PP0C7X0 464 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 LIMS3P0CW19 117 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 LIMS4P0CW20 117 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 SERPINA2P20848 420 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 IL3RAP26951 378 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 DCKP27707 260 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 BDKRB2P30411 391 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 RBM11P57052 281 aaKnown RBP11.69□□□□□ -0.54
VPS28-215ENST00000531924 MED21Q13503 144 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 ZNF529Q6P280 563 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 ASCL4Q6XD76 172 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 SLC35E3Q7Z769 313 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 LINC00596Q86U02 117 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 PQLC1Q8N2U9 271 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 C5orf56Q8N8D9 126 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 ARL11Q969Q4 196 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 S100A14Q9HCY8 104 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 FGF20Q9NP95 211 aaPredicted RBP11.69□□□□□ -0.54
VPS28-215ENST00000531924 ZFP57Q9NU63 452 aa11.69□□□□□ -0.54
VPS28-215ENST00000531924 KIAA2026Q5HYC2 2103 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms