RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZFPL1O95159 310 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 IL1AP01583 271 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 SNRNP70P08621 437 aaKnown RBP8.99□□□□□ -0.97
VPS28-214ENST00000531032 RPL23AP62750 156 aaKnown RBP8.99□□□□□ -0.97
VPS28-214ENST00000531032 IL13RA2Q14627 380 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 PAN3Q58A45 887 aaKnown RBP8.99□□□□□ -0.97
VPS28-214ENST00000531032 RSBN1Q5VWQ0 802 aaPredicted RBP8.99□□□□□ -0.97
VPS28-214ENST00000531032 TTC23Q5W5X9 447 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 ZNF529Q6P280 563 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 TMPRSS11AQ6ZMR5 421 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 MRPL41Q8IXM3 137 aaKnown RBP8.99□□□□□ -0.97
VPS28-214ENST00000531032 C5orf56Q8N8D9 126 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 PXT1Q8NFP0 134 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 OR51D1Q8NGF3 324 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 OR13A1Q8NGR1 328 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 OR56B4Q8NH76 319 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 OR5AK2Q8NH90 309 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 CNIH3Q8TBE1 160 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 CPNE2Q96FN4 548 aaPredicted RBP8.99□□□□□ -0.97
VPS28-214ENST00000531032 ZNF649Q9BS31 505 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 GPR61Q9BZJ8 451 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 VCXQ9H320 206 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 ISG20L2Q9H9L3 353 aaKnown RBP8.99□□□□□ -0.97
VPS28-214ENST00000531032 CHCHD3Q9NX63 227 aaKnown RBP8.99□□□□□ -0.97
VPS28-214ENST00000531032 IDI2-AS1Q9NZ38 188 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 KIF25Q9UIL4 384 aa8.99□□□□□ -0.97
VPS28-214ENST00000531032 KMT2CQ8NEZ4 4911 aaKnown RBP8.98□□□□□ -0.97
VPS28-214ENST00000531032 MAGEB3O15480 346 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 FGF16O43320 207 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 C21orf33P30042 268 aaPredicted RBP8.98□□□□□ -0.97
VPS28-214ENST00000531032 SLC6A1P30531 599 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 HOXD3P31249 432 aaPredicted RBP8.98□□□□□ -0.97
VPS28-214ENST00000531032 KCNJ3P48549 501 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 THBS3P49746 956 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 RAB7AP51149 207 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 MADCAM1Q13477 382 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 DIAPH2-AS1Q14236 149 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 LPCAT4Q643R3 524 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 C11orf87Q6NUJ2 197 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 ZNF329Q86UD4 541 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 OR8H3Q8N146 312 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 DHRSXQ8N5I4 330 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 DRAM1Q8N682 238 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 PACRGLQ8N7B6 248 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 Q8NFD4 153 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 OR10A7Q8NGE5 316 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 CHPT1Q8WUD6 406 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 APH1BQ8WW43 257 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 LEAP2Q969E1 77 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 PDCD1LG2Q9BQ51 273 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 BARHL1Q9BZE3 327 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 PSG11Q9UQ72 335 aa8.98□□□□□ -0.97
VPS28-214ENST00000531032 E9PI62 339 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 GABRPO00591 440 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 IGHV3-7P01780 117 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 CD2P06729 351 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 TMEM11P17152 192 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 RAB3AP20336 220 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 DCKP27707 260 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 SOX2P48431 317 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 SMN1Q16637 294 aaKnown RBP8.97□□□□□ -0.97
VPS28-214ENST00000531032 DEFB121Q5J5C9 76 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 ASCL4Q6XD76 172 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 SLC16A12Q6ZSM3 486 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 OR2W3Q7Z3T1 314 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 OR51A2Q8NGJ7 313 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 PLPPR1Q8TBJ4 325 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 MRGPRDQ8TDS7 321 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 DPF1Q92782 380 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 NOL4LQ96MY1 436 aaPredicted RBP8.97□□□□□ -0.97
VPS28-214ENST00000531032 NR1H4Q96RI1 486 aaPredicted RBP8.97□□□□□ -0.97
VPS28-214ENST00000531032 GPER1Q99527 375 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 FAM192AQ9GZU8 254 aa8.97□□□□□ -0.97
VPS28-214ENST00000531032 MRPS18AQ9NVS2 196 aaKnown RBP8.97□□□□□ -0.97
VPS28-214ENST00000531032 EXOSC1Q9Y3B2 195 aaKnown RBP8.97□□□□□ -0.97
VPS28-214ENST00000531032 SERPINE3A8MV23 424 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 WBP4O75554 376 aaKnown RBP8.96□□□□□ -0.98
VPS28-214ENST00000531032 IGKV1D-33P01593 117 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 IGKV1-33P01594 117 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 IGHG2P01859 326 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 SSTR5P35346 364 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 GNG10P50151 68 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 PPP3R1P63098 170 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 ZNF816Q0VGE8 651 aaPredicted RBP8.96□□□□□ -0.98
VPS28-214ENST00000531032 EBI3Q14213 229 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 HES1Q14469 280 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 PIGYQ3MUY2 71 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 C18orf65Q6ZTR6 163 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 C8orf86Q6ZUL3 223 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 C8orf59Q8N0T1 100 aaPredicted RBP8.96□□□□□ -0.98
VPS28-214ENST00000531032 COMMD1Q8N668 190 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 RFESDQ8TAC1 157 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 GPR148Q8TDV2 347 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 TNFAIP8L1Q8WVP5 186 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 P2RX4Q99571 388 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 B9D2Q9BPU9 175 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 MCRIP2Q9BUT9 160 aaKnown RBP8.96□□□□□ -0.98
VPS28-214ENST00000531032 IFT22Q9H7X7 185 aa8.96□□□□□ -0.98
VPS28-214ENST00000531032 FGF20Q9NP95 211 aaPredicted RBP8.96□□□□□ -0.98
VPS28-214ENST00000531032 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms