RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 OR5T2Q8NGG2 359 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 OR4A4PQ8NGN8 299 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 PRR7Q8TB68 274 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 RTN4IP1Q8WWV3 396 aaPredicted RBP17.45■□□□□ 0.38
VPS28-209ENST00000528142 GALNT14Q96FL9 552 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 MRPL37Q9BZE1 423 aaKnown RBP17.45■□□□□ 0.38
VPS28-209ENST00000528142 NAA60Q9H7X0 242 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 SLC2A9Q9NRM0 540 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 ITGB1BP2Q9UKP3 347 aa17.45■□□□□ 0.38
VPS28-209ENST00000528142 TRGV8A0A0C4DH27 118 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 PSPNO60542 156 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 SLC25A4P12235 298 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 PTAFRP25105 342 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 ABCA11PQ4W5N1 156 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 C11orf87Q6NUJ2 197 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 TEX261Q6UWH6 196 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 SSX8Q7RTT4 187 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 SLC7A5P1Q8MH63 180 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 CABLES2Q9BTV7 478 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 NMES1Q9C002 83 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 OR14J1Q9UGF5 321 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 GLS2Q9UI32 602 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 PCDHB10Q9UN67 800 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 U3KQ87 197 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 USP24Q9UPU5 2620 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 DPRXA6NFQ7 191 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 DIRAS3O95661 229 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 RPA2P15927 270 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 CFHR2P36980 270 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 RBMXP38159 391 aaKnown RBP17.44■□□□□ 0.38
VPS28-209ENST00000528142 PHLDA2Q53GA4 152 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 MOB1BQ7L9L4 216 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 WFDC8Q8IUA0 241 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 OR8H1Q8NGG4 311 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 COMMD9Q9P000 198 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 WIPI2Q9Y4P8 454 aa17.44■□□□□ 0.38
VPS28-209ENST00000528142 SHANK1Q9Y566 2161 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 SPTA1P02549 2419 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 TRBV6-7A0A0A0MS04 114 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 hCG_1807616A0A1W2PRN6 198 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 MPTX1A8MV57 137 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 M0R233 179 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 C4BPBP20851 252 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 GNRHRP30968 328 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 CA7P43166 264 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 CYCSP99999 105 aaKnown RBP17.43■□□□□ 0.38
VPS28-209ENST00000528142 ATXN7L3Q14CW9 347 aaPredicted RBP17.43■□□□□ 0.38
VPS28-209ENST00000528142 SPRNQ5BIV9 151 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 ST6GALNAC3Q8NDV1 305 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 OR10Z1Q8NGY1 313 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 LRRC29Q8WV35 223 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 MRPL24Q96A35 216 aaKnown RBP17.43■□□□□ 0.38
VPS28-209ENST00000528142 MEGF10Q96KG7 1140 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 MBNL3Q9NUK0 354 aaKnown RBP17.43■□□□□ 0.38
VPS28-209ENST00000528142 TAAR3PQ9P1P4 343 aa17.43■□□□□ 0.38
VPS28-209ENST00000528142 TMEM187Q14656 261 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 SMIM21Q3B7S5 101 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 LRRC37A5PQ49AS3 106 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 OR11L1Q8NGX0 322 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 OR2V2Q96R30 315 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 RDH8Q9NYR8 311 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 KCNIP3Q9Y2W7 256 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 HEATR1Q9H583 2144 aaKnown RBP17.42■□□□□ 0.38
VPS28-209ENST00000528142 TRAV39A0A0B4J263 110 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 IGKV1D-13A0A0B4J2D9 117 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 IFNL4K9M1U5 179 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 IGKV1-13P0DP09 117 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 TMUB2Q71RG4 321 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 ZNF546Q86UE3 836 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 ZNF680Q8NEM1 530 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 OR10C1Q96KK4 312 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 MFFQ9GZY8 342 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 METTL8Q9H825 291 aaKnown RBP17.42■□□□□ 0.38
VPS28-209ENST00000528142 TRAPPC2LQ9UL33 140 aa17.42■□□□□ 0.38
VPS28-209ENST00000528142 RP1L1Q8IWN7 2480 aaPredicted RBP17.41■□□□□ 0.38
VPS28-209ENST00000528142 SRRM5B3KS81 715 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 NPIPB11E5RHQ5 1161 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.41■□□□□ 0.38
VPS28-209ENST00000528142 SPRY3O43610 288 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 OR5AC1P0C628 307 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 EGR1P18146 543 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 S100A11P31949 105 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 CASP6P55212 293 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 SELENOVP59797 346 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 IL15RAQ13261 267 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 LDLRAD3Q86YD5 345 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 H1FOOQ8IZA3 346 aaPredicted RBP17.41■□□□□ 0.38
VPS28-209ENST00000528142 KIRREL1Q96J84 757 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 SUCNR1Q9BXA5 334 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 TNFSF18Q9UNG2 199 aa17.41■□□□□ 0.38
VPS28-209ENST00000528142 ABCD4O14678 606 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 HOXB5P09067 269 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 PSMB6P28072 239 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 SP6Q3SY56 376 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 FAM185AQ8N0U4 392 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 LRTM2Q8N967 370 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 CCDC71LQ8N9Z2 235 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 C2orf50Q96LR7 162 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 WFIKKN1Q96NZ8 548 aa17.4■□□□□ 0.38
VPS28-209ENST00000528142 TFF1P04155 84 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms