RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 SSX3Q99909 188 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 C19orf24Q9BVV8 132 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 CHID1Q9BWS9 393 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 PRRG3Q9BZD7 231 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 RACGAP1Q9H0H5 632 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 MMADHCQ9H3L0 296 aaPredicted RBP2.86□□□□□ -1.95
NUP54-212ENST00000513248 HEXA-AS1Q9H8Q6 139 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 FN3KRPQ9HA64 309 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 TMEM106BQ9NUM4 274 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 UFSP2Q9NUQ7 469 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 ARMC1Q9NVT9 282 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 DNAJC27Q9NZQ0 273 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 PDP1Q9P0J1 537 aaPredicted RBP2.86□□□□□ -1.95
NUP54-212ENST00000513248 CD300AQ9UGN4 299 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 IL19Q9UHD0 177 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 PSORS1C1Q9UIG5 152 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 ETV7Q9Y603 341 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 NPTNQ9Y639 398 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 DSCAMO60469 2012 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 HEATR5AQ86XA9 2040 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 MPDZO75970 2070 aa2.86□□□□□ -1.95
NUP54-212ENST00000513248 PPIAL4EA0A075B759 164 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 IGLV1-36A0A0B4J1U3 117 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 DHRS12A0PJE2 317 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 FAM183AA6NL82 134 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 ZNF878C9JN71 531 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 PPIAL4DF5H284 164 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 F5H5P2 479 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 J3QLI3 93 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 DCTN6O00399 190 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 ZNF593O00488 134 aaPredicted RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 BHLHE40O14503 412 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 CCSO14618 274 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 TXNL1O43396 289 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 RP2O75695 350 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 IGHV2-5P01817 119 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 HLA-DPB1P04440 258 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 HMGN1P05114 100 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 CD55P08174 381 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 ACSM4P0C7M7 580 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 PPIAL4FP0DN26 164 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 SLC2A1P11166 492 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 SPI1P17947 270 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 KITLGP21583 273 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 CFL1P23528 166 aaKnown RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 CAPGP40121 348 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 MDH2P40926 338 aaKnown RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 RPS27P42677 84 aaKnown RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 CX3CR1P49238 355 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 SLC25A1P53007 311 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 GMFBP60983 142 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 GRB2P62993 217 aaKnown RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 CRMP1Q14194 572 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 GK3PQ14409 553 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 GINS1Q14691 196 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 SPHARQ15513 63 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 KCNJ8Q15842 424 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 SNCBQ16143 134 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 AARDQ4LEZ3 155 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 C1orf146Q5VVC0 180 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 PRAMEF6Q5VXH4 476 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 LCN8Q6JVE9 175 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 PLBD1Q6P4A8 553 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 DRAM2Q6UX65 266 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 FBXW12Q6X9E4 464 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 ZNF841Q6ZN19 808 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 TSEN54Q7Z6J9 526 aaKnown RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 FTMTQ8N4E7 242 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 SPERTQ8NA61 448 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 SLC26A10Q8NG04 563 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 ZNF420Q8TAQ5 688 aaPredicted RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 FAM81AQ8TBF8 368 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 GPR148Q8TDV2 347 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 CANT1Q8WVQ1 401 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 C22orf15Q8WYQ4 148 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 GGHQ92820 318 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 SLAMF6Q96DU3 332 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 ASB9Q96DX5 294 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 TECTBQ96PL2 329 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 GPA33Q99795 319 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 ADAT1Q9BUB4 502 aaKnown RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 SUCNR1Q9BXA5 334 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 SLC22A4Q9H015 551 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 JPT2Q9H910 190 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 MARCH7Q9H992 704 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 PATZ1Q9HBE1 687 aaKnown RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 DDX28Q9NUL7 540 aaKnown RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 TAS2R1Q9NYW7 299 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 IL20Q9NYY1 176 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 ZNF319Q9P2F9 582 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 MIOXQ9UGB7 285 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 ATPIF1Q9UII2 106 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 LAMP5Q9UJQ1 280 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 PPIAL4AQ9Y536 164 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 ORC6Q9Y5N6 252 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 AUP1Q9Y679 476 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 LHFPL6Q9Y693 200 aa2.85□□□□□ -1.95
NUP54-212ENST00000513248 RAI1Q7Z5J4 1906 aaPredicted RBP2.85□□□□□ -1.95
NUP54-212ENST00000513248 COL6A5A8TX70 2615 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms