RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DEFB132Q7Z7B7 95 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 SYT8Q8NBV8 401 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 MRPL24Q96A35 216 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 SCNM1Q9BWG6 230 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 TMEM30AQ9NV96 361 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 PRRG2O14669 202 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 CCL5P13501 91 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 NKG7Q16617 165 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 OLIG3Q7RTU3 272 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 OR4X1Q8NH49 305 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 RASL11BQ9BPW5 248 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 C12orf49Q9H741 205 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 SPANXCQ9NY87 97 aa9.92□□□□□ -0.82
LIMCH1-217ENST00000512946 A0A087WWC5 75 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 DNASE2O00115 360 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 NRG2O14511 850 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 TNFSF10P50591 281 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 AGERQ15109 404 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 ZNF841Q6ZN19 808 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 UBALD2Q8IYN6 164 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 DEFB108BQ8NET1 73 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 NUDT11Q96G61 164 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 SPAG8Q99932 426 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 THAP10Q9P2Z0 257 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 HSPB7Q9UBY9 170 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 GNG7O60262 68 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 S1PR2O95136 353 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 CXCL2P19875 107 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 LSM6P62312 80 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 RNPS1Q15287 305 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 OR1L8Q8NGR8 309 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 PAXXQ9BUH6 204 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 SLC26A1Q9H2B4 701 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 SIRT5Q9NXA8 310 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 MYH7P12883 1935 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 DSPPQ9NZW4 1301 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 MYH15Q9Y2K3 1946 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 A0A0U1RQS6 177 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 CXCL13O43927 109 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 FZD5Q13467 585 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 PAQR9Q6ZVX9 377 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 OR4X2Q8NGF9 303 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 DHCR7Q9UBM7 475 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 A0A1B0GW15 77 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 ATP5LO75964 103 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 HOXA5P20719 270 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 MRPS11P82912 194 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 SRSF5Q13243 272 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 ZNF79Q15937 498 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 CEACAM16Q2WEN9 425 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 ZNF519Q8TB69 540 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 CYSLTR1Q9Y271 337 aa9.91□□□□□ -0.82
LIMCH1-217ENST00000512946 COL1A1P02452 1464 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 A0A0A6YYD5 115 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 GABRG2P18507 467 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 ID1P41134 155 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 AICDAQ9GZX7 198 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 A0A1W2PNR3 127 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 OR4A8P0C604 315 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 LYPD8Q6UX82 237 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 YRDCQ86U90 279 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 SFTPA2Q8IWL1 248 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 SFTPA1Q8IWL2 248 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 OR8I2Q8N0Y5 310 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 TLNRD1Q9H1K6 362 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 MRPL16Q9NX20 251 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 CHD2O14647 1828 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 IDSB3KWA1 339 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 LGALS7P47929 136 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 CLLU1OSQ5K130 101 aa9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 SSBP4Q9BWG4 385 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 QTRT1Q9BXR0 403 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-217ENST00000512946 C3P01024 1663 aa9.9□□□□□ -0.83
LIMCH1-217ENST00000512946 PRSS2P07478 247 aa9.9□□□□□ -0.83
LIMCH1-217ENST00000512946 RPS27P42677 84 aaKnown RBP9.9□□□□□ -0.83
LIMCH1-217ENST00000512946 ROM1Q03395 351 aa9.9□□□□□ -0.83
LIMCH1-217ENST00000512946 C12orf76Q8N812 135 aaPredicted RBP9.9□□□□□ -0.83
LIMCH1-217ENST00000512946 GALNT14Q96FL9 552 aa9.9□□□□□ -0.83
LIMCH1-217ENST00000512946 CCSMST1Q4G0I0 132 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 TMEM252Q8N6L7 170 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 ASB5Q8WWX0 329 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 PRDM13Q9H4Q3 707 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 WSB2Q9NYS7 404 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 LAMTOR2Q9Y2Q5 125 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 RAXQ9Y2V3 346 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 PREX1Q8TCU6 1659 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 MYO5BQ9ULV0 1848 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 MYH9P35579 1960 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 HYPMO75409 117 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 HPRT1P00492 218 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 MGPP08493 103 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 PRDX2P32119 198 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 TMPRSS3P57727 454 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 MOGAT3Q86VF5 341 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 SPSB4Q96A44 273 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 CNRIP1Q96F85 164 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 VSIG4Q9Y279 399 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 ZNF257Q9Y2Q1 563 aa9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 CA1P00915 261 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-217ENST00000512946 B4GALT1P15291 398 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms