RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 LINC00574Q9H8X3 128 aa8.06□□□□□ -1.12
USP54-214ENST00000492357 CHMP1AQ9HD42 196 aaPredicted RBP8.06□□□□□ -1.12
USP54-214ENST00000492357 HRASLSQ9HDD0 168 aa8.06□□□□□ -1.12
USP54-214ENST00000492357 BEX4Q9NWD9 120 aaPredicted RBP8.06□□□□□ -1.12
USP54-214ENST00000492357 TAS2R3Q9NYW6 316 aa8.06□□□□□ -1.12
USP54-214ENST00000492357 MAB21L2Q9Y586 359 aa8.06□□□□□ -1.12
USP54-214ENST00000492357 NUBP2Q9Y5Y2 271 aa8.06□□□□□ -1.12
USP54-214ENST00000492357 SMG1Q96Q15 3661 aaKnown RBP8.06□□□□□ -1.12
USP54-214ENST00000492357 A0A1W2PPH5 198 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 hADV38S2A0JD32 116 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 NDUFB3O43676 98 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 PRAF2O60831 178 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 RBP4P02753 201 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 FCER2P06734 321 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 PTHLHP12272 177 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 GLP1RP43220 463 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 PDLIM4P50479 330 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 MECP2P51608 486 aaKnown RBP8.05□□□□□ -1.12
USP54-214ENST00000492357 HLA-DRB3P79483 266 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 HTD2P86397 168 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 HMGN3Q15651 99 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 PLET1Q6UQ28 207 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 DHRS11Q6UWP2 260 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 DTX3Q8N9I9 347 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 OR4C16Q8NGL9 310 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 OR56B4Q8NH76 319 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 GIMAP1Q8WWP7 306 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 GCDHQ92947 438 aaPredicted RBP8.05□□□□□ -1.12
USP54-214ENST00000492357 RAB39BQ96DA2 213 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 MBD6Q96DN6 1003 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 TMEM246Q9BRR3 403 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 MARVELD1Q9BSK0 173 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 ALX4Q9H161 411 aaPredicted RBP8.05□□□□□ -1.12
USP54-214ENST00000492357 PPA2Q9H2U2 334 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 GHITMQ9H3K2 345 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 UBE2J1Q9Y385 318 aaPredicted RBP8.05□□□□□ -1.12
USP54-214ENST00000492357 LINC00312Q9Y6C7 94 aa8.05□□□□□ -1.12
USP54-214ENST00000492357 USP9YO00507 2555 aaPredicted RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 IGHV3-64DA0A0J9YX35 117 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 ODAMA1E959 279 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 ZNF729A6NN14 1252 aaPredicted RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 ITGB1BP1O14713 200 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 TMPRSS2O15393 492 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 FABP7O15540 132 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 NDUFB6O95139 128 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 COL8A2P25067 703 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 GPR6P46095 362 aaPredicted RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 GABRA2P47869 451 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 UCP3P55916 312 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 UBE2MP61081 183 aaKnown RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 MSMO1Q15800 293 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 PLA1AQ53H76 456 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 KRBOX4Q5JUW0 171 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 CD276Q5ZPR3 534 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 LPCAT3Q6P1A2 487 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 BTN2A1Q7KYR7 527 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 LHFPL1Q86WI0 220 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 BPIFB2Q8N4F0 458 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 GVQW1Q8N7I0 195 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 ZDHHC22Q8N966 263 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 BOLLQ8N9W6 283 aaKnown RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 OR4S1Q8NGB4 309 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 OR52M1Q8NGK5 317 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 OR6F1Q8NGZ6 308 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 TERB2Q8NHR7 220 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 C8orf46Q8TAG6 207 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 PLPPR1Q8TBJ4 325 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 NEIL1Q96FI4 390 aaPredicted RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 ZNF486Q96H40 463 aaPredicted RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 COQ2Q96H96 371 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 ST6GALNAC5Q9BVH7 336 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 GAL3ST2Q9H3Q3 398 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 PATZ1Q9HBE1 687 aaKnown RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 SLC25A10Q9UBX3 287 aaPredicted RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 ELF5Q9UKW6 265 aaPredicted RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 TRAPPC2LQ9UL33 140 aa8.04□□□□□ -1.12
USP54-214ENST00000492357 SPTAN1Q13813 2472 aaKnown RBP8.04□□□□□ -1.12
USP54-214ENST00000492357 MEIKINA0A087WXM9 373 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 TRGV10A0A0A0MS01 117 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 TRBV6-7A0A0A0MS04 114 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 PIGBOS1A0A0B4J2F0 54 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 A1L4Q6 167 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 F5H0A9 414 aaPredicted RBP8.03□□□□□ -1.12
USP54-214ENST00000492357 SPINT2O43291 252 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 ADAM20O43506 726 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 SLC22A5O76082 557 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 DHFRP00374 187 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 TCRBP04435 133 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 AMY2AP04746 511 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 ZNF735P0CB33 412 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 OR5H8P0DN80 308 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 HLA-DMAP28067 261 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 BTCP35070 178 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 HRH1P35367 487 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 CDKN1AP38936 164 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 TSPAN5P62079 268 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 MADCAM1Q13477 382 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 ATXN7L3Q14CW9 347 aaPredicted RBP8.03□□□□□ -1.12
USP54-214ENST00000492357 ZNF787Q6DD87 383 aa8.03□□□□□ -1.12
USP54-214ENST00000492357 SFRP4Q6FHJ7 346 aaPredicted RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms