RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 OR5B21A6NL26 309 aa9.62□□□□□ -0.87
HDAC6-228ENST00000486227 C17orf112F2Z3M2 114 aa9.62□□□□□ -0.87
HDAC6-228ENST00000486227 H3BP45 60 aa9.62□□□□□ -0.87
HDAC6-228ENST00000486227 GEMIN2O14893 280 aaKnown RBP9.62□□□□□ -0.87
HDAC6-228ENST00000486227 SUB1P53999 127 aaKnown RBP eCLIP9.62□□□□□ -0.877e-9■■■□□ 16.5
HDAC6-228ENST00000486227 SURF2Q15527 256 aaPredicted RBP9.62□□□□□ -0.87
HDAC6-228ENST00000486227 RBMXL3Q8N7X1 1067 aaKnown RBP9.62□□□□□ -0.87
HDAC6-228ENST00000486227 TXN2Q99757 166 aa9.62□□□□□ -0.87
HDAC6-228ENST00000486227 MPC1Q9Y5U8 109 aa9.62□□□□□ -0.87
HDAC6-228ENST00000486227 PLXNA3P51805 1871 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 TRBV5-5A0A0J9YX44 114 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 TMEM30CPA0ZSE6 113 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 HSBP1L1C9JCN9 74 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 TCAPO15273 167 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 TRAF3IP2O43734 574 aaPredicted RBP9.61□□□□□ -0.87
HDAC6-228ENST00000486227 ELLP55199 621 aaPredicted RBP9.61□□□□□ -0.87
HDAC6-228ENST00000486227 ENDOGQ14249 297 aaKnown RBP9.61□□□□□ -0.87
HDAC6-228ENST00000486227 ATP1A1-AS1Q5TC04 95 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 SLC25A47Q6Q0C1 308 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 PPP1R32Q7Z5V6 425 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 OR13D1Q8NGV5 346 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 TMEM171Q8WVE6 324 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 CHST5Q9GZS9 411 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 UBTD1Q9HAC8 227 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 LMX1BO60663 402 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 FBXW9Q5XUX1 488 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 THNSL2Q86YJ6 484 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 LHX4Q969G2 390 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 PRR19A6NJB7 356 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 AHRRA9YTQ3 701 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 ZNF205O95201 554 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 SULT1A2P50226 295 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 IL13RA2Q14627 380 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 NECAP1Q8NC96 275 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 CARHSP1Q9Y2V2 147 aaKnown RBP9.61□□□□□ -0.87
HDAC6-228ENST00000486227 ARL3P36405 182 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 PSG4Q00888 419 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 CFHR1Q03591 330 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 C10orf35Q96D05 121 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 MEGF10Q96KG7 1140 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 RCC2Q9P258 522 aaKnown RBP9.61□□□□□ -0.87
HDAC6-228ENST00000486227 TMED3Q9Y3Q3 217 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 LHFPL6Q9Y693 200 aa9.61□□□□□ -0.87
HDAC6-228ENST00000486227 GOLGB1Q14789 3259 aaKnown RBP9.61□□□□□ -0.87
HDAC6-228ENST00000486227 RBFOX3A6NFN3 312 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 CD8AP01732 235 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 RPS16P62249 146 aaKnown RBP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 POLR2GP62487 172 aaKnown RBP eCLIP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 OR10V1Q8NGI7 309 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 ZNRF4Q8WWF5 429 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 SCNM1Q9BWG6 230 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 MS4A5Q9H3V2 200 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 ANXA10Q9UJ72 324 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 TINAGQ9UJW2 476 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 ZNF318Q5VUA4 2279 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 A0A1W2PPQ1 181 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 PTBP3O95758 552 aaKnown RBP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 SEC11BP0C7V7 166 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 ZBTB25P24278 435 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 OR10AD1Q8NGE0 317 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 PTX4Q96A99 478 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 MESP1Q9BRJ9 268 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 SIRT7Q9NRC8 400 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 FOXJ2Q9P0K8 574 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 DMRT1Q9Y5R6 373 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 PI4KAP42356 2102 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 A0A1W2PP11 408 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 COX6B1P14854 86 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 RANP62826 216 aaKnown RBP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 HLA-DRB3P79483 266 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 ZNF816Q0VGE8 651 aaPredicted RBP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 ACOT6Q3I5F7 207 aaPredicted RBP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 ZNF66Q6ZN08 573 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 DBX2Q6ZNG2 339 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 POC1BQ8TC44 478 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 RPUSD4Q96CM3 377 aaKnown RBP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 PACRGQ96M98 296 aaPredicted RBP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 CDIPTO14735 213 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 RAMP1O60894 148 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 CST7O76096 145 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 KRASP01116 189 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 OR8U8P0C7N1 319 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 CT45A6P0DMU7 189 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 CT45A5P0DMU8 189 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 CT45A7P0DMV0 189 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 GNB1P62873 340 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 PNRC1Q12796 327 aaPredicted RBP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 CT45A1Q5HYN5 189 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 NR2C2APQ86WQ0 139 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 ADAD2Q8NCV1 583 aaKnown RBP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 CT45A3Q8NHU0 189 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 LRRC29Q8WV35 223 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 BORCS7Q96B45 105 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 ARV1Q9H2C2 271 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 PRR13Q9NZ81 148 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 ONECUT1Q9UBC0 465 aa9.6□□□□□ -0.87
HDAC6-228ENST00000486227 METTL1Q9UBP6 276 aaKnown RBP9.6□□□□□ -0.87
HDAC6-228ENST00000486227 CEACAM6P40199 344 aa9.59□□□□□ -0.87
HDAC6-228ENST00000486227 KLRB1Q12918 225 aa9.59□□□□□ -0.87
HDAC6-228ENST00000486227 PIGYQ3MUY2 71 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms