RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ZNF146Q15072 292 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 MED22Q15528 200 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 MAPRE2Q15555 327 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 C19orf54Q5BKX5 351 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 CLVS2Q5SYC1 327 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 Q5VSD8 79 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 CTRB2Q6GPI1 263 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 ERICH5Q6P6B1 374 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 CD200R1LQ6Q8B3 271 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 SHFQ7M4L6 423 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 CYP4Z1Q86W10 505 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 TMEM104Q8NE00 496 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 OR8B12Q8NGG6 310 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 OR52N4Q8NGI2 321 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 OR52B4Q8NGK2 314 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 OR13C5Q8NGS8 318 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 RP9Q8TA86 221 aaKnown RBP5.97□□□□□ -1.45
USP54-211ENST00000474929 RTN4IP1Q8WWV3 396 aaPredicted RBP5.97□□□□□ -1.45
USP54-211ENST00000474929 ASB9Q96DX5 294 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 IFT27Q9BW83 186 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 DGCR6LQ9BY27 220 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 KAT8Q9H7Z6 458 aaKnown RBP5.97□□□□□ -1.45
USP54-211ENST00000474929 GID8Q9NWU2 228 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 ZNF319Q9P2F9 582 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 KLHDC2Q9Y2U9 406 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 U3KQV3 271 aa5.97□□□□□ -1.45
USP54-211ENST00000474929 ACOD1A6NK06 481 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 LOC110117498-PIK3R3F6TDL0 507 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 SOX15O60248 233 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 IFNA10P01566 189 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 IL1AP01583 271 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 COX4I1P13073 169 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 C21orf33P30042 268 aaPredicted RBP5.96□□□□□ -1.46
USP54-211ENST00000474929 BLVRBP30043 206 aaPredicted RBP5.96□□□□□ -1.46
USP54-211ENST00000474929 PYCR1P32322 319 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 GZMMP51124 257 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 ACTBP60709 375 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 ACTBL2Q562R1 376 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 KRBOX4Q5JUW0 171 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 ZNF660Q6AZW8 331 aaPredicted RBP5.96□□□□□ -1.46
USP54-211ENST00000474929 LYPD4Q6UWN0 246 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 ASRGL1Q7L266 308 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 ZNF367Q7RTV3 350 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 BATF2Q8N1L9 274 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 C8orf31Q8N9H6 132 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 CHST4Q8NCG5 386 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 OR13A1Q8NGR1 328 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 ZNF503Q96F45 646 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 SH3GL1Q99961 368 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 ZNF251Q9BRH9 671 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 EXOSC4Q9NPD3 245 aaKnown RBP5.96□□□□□ -1.46
USP54-211ENST00000474929 CALYQ9NYX4 217 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 IDI2-AS1Q9NZ38 188 aa5.96□□□□□ -1.46
USP54-211ENST00000474929 GMPR2Q9P2T1 348 aaKnown RBP5.96□□□□□ -1.46
USP54-211ENST00000474929 TRBV2A0A0J9YWF9 115 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 BBIP1A8MTZ0 92 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 FXYD1O00168 92 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 SH2D1BO14796 132 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 DHRS3O75911 302 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 IFNA21P01568 189 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 IFNA17P01571 189 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 TRGV3P03979 118 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 GSTT1P30711 240 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 GLP1RP43220 463 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 REG1BP48304 166 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 F2RL1P55085 397 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 FXYD6P3P58550 94 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 C17orf58Q2M2W7 97 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 Q3ZCU0 254 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 LRRC23Q53EV4 343 aaPredicted RBP5.95□□□□□ -1.46
USP54-211ENST00000474929 AKIRIN2Q53H80 203 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 LIN54Q6MZP7 749 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 Q6ZRM9 215 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 UBE2DNLQ8IWF7 75 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 LINC00311Q8N616 119 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 DNAAF1Q8NEP3 725 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 OR8J3Q8NGG0 315 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 OR6N2Q8NGY6 317 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 ABHD5Q8WTS1 349 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 ABHD6Q9BV23 337 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 C6orf62Q9GZU0 229 aaPredicted RBP5.95□□□□□ -1.46
USP54-211ENST00000474929 OR52D1Q9H346 318 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 NCOR1P1Q9H4R4 102 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 LINC00574Q9H8X3 128 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 EFCAB1Q9HAE3 211 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 MRGBPQ9NV56 204 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 PTTG2Q9NZH5 202 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 CNOT2Q9NZN8 540 aaKnown RBP5.95□□□□□ -1.46
USP54-211ENST00000474929 PEF1Q9UBV8 284 aaKnown RBP5.95□□□□□ -1.46
USP54-211ENST00000474929 RNF213Q63HN8 5207 aa5.95□□□□□ -1.46
USP54-211ENST00000474929 A0A1W2PRQ8 180 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 DHRS7CA6NNS2 312 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 NBR2O15453 112 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 SNX3O60493 162 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 MITFO75030 526 aaPredicted RBP5.94□□□□□ -1.46
USP54-211ENST00000474929 NPPAP01160 153 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 SCTP09683 121 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 PSKH1P11801 424 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 OMPP47874 163 aa5.94□□□□□ -1.46
USP54-211ENST00000474929 SELENOWP63302 87 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms