RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 DYSFO75923 2080 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 DNMT1P26358 1616 aaKnown RBP1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 IGKV1D-37A0A075B6S9 117 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 TRAV8-2A0A0B4J237 113 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 A0A1B0GX12 115 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 A6NED7 52 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 C8orf87E5RJ46 101 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 TMEM250H0YL14 139 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 K7ERQ8 282 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 FABP7O15540 132 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 SYNGR2O43760 224 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 POP7O75817 140 aaKnown RBP1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 SLC35E2BP0CK96 405 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 CRABP2P29373 138 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 FLOT2Q14254 428 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 ZBTB6Q15916 424 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 BCL2A1Q16548 175 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 OR10J3Q5JRS4 329 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 FAM162BQ5T6X4 162 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 Q8NAQ8 132 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 ACBD4Q8NC06 268 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 ZNF738Q8NE65 137 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 SLC25A44Q96H78 314 aaPredicted RBP1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 REEP6Q96HR9 211 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 FAAP24Q9BTP7 215 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 EBPLQ9BY08 206 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 TREM1Q9NP99 234 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 OR5V1Q9UGF6 321 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 MCTS1Q9ULC4 181 aaKnown RBP1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 FADS3Q9Y5Q0 445 aa1.31□□□□□ -2.2
CCDC88A-212ENST00000474059 IGLV10-54A0A075B6I4 117 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 A0A1B0GTI1 187 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 A0A1B0GU33 70 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 OR5H14A6NHG9 310 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 SULT1C2O00338 296 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 POLR3GO15318 223 aaPredicted RBP1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 TNFAIP8O95379 198 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 SNAP29O95721 258 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 GPR75O95800 540 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 GP1BAP07359 652 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 NQO2P16083 231 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 PYCR1P32322 319 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 EVI2BP34910 448 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 TNFRSF9Q07011 255 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 XRCC4Q13426 336 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 TMED1Q13445 227 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 RAB31Q13636 194 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 OR4D1Q15615 310 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 USF2Q15853 346 aaPredicted RBP1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 ZCWPW2Q504Y3 356 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 SMARCD3Q6STE5 483 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 LYZL2Q7Z4W2 148 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 FAM19A3Q7Z5A8 133 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 LYPD6Q86Y78 171 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 OR4A5Q8NH83 315 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 PDCD6IPQ8WUM4 868 aaKnown RBP1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 OR5P3Q8WZ94 311 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 RORBQ92753 470 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 CLDN23Q96B33 292 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 MRAP2Q96G30 205 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 CYTH2Q99418 400 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 B9D2Q9BPU9 175 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 CHMP5Q9NZZ3 219 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 NAGKQ9UJ70 344 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 KIAA0232Q92628 1395 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 RAB3GAP2Q9H2M9 1393 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 NUP205Q92621 2012 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 PRR14LQ5THK1 2151 aa1.3□□□□□ -2.2
CCDC88A-212ENST00000474059 TRBV24-1A0A075B6N3 115 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 E7EQL1 145 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 SLC31A1O15431 190 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 FGF16O43320 207 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 PSCAO43653 123 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 SOX14O95416 240 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 EPPINO95925 133 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 UGT2B10P36537 528 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 SPAM1P38567 509 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 HSPA13P48723 471 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 MMDQ15546 238 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 SELENOHQ8IZQ5 122 aaKnown RBP1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 HS3ST5Q8IZT8 346 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 C17orf78Q8N4C9 275 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 KRTCAP2Q8N6L1 136 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 FER1L6-AS1Q8NA97 138 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 OR11G2Q8NGC1 345 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 KCTD4Q8WVF5 259 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 GTF2H4Q92759 462 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 CCDC127Q96BQ5 260 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 DDIT4LQ96D03 193 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 CMBLQ96DG6 245 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 CFAP53Q96M91 514 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 HBEGFQ99075 208 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 PRSS27Q9BQR3 290 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 ALX4Q9H161 411 aaPredicted RBP1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 OR51E2Q9H255 320 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 USP42Q9H9J4 1324 aaKnown RBP1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 NUP153P49790 1475 aaKnown RBP1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 CEP170Q5SW79 1584 aa1.29□□□□□ -2.2
CCDC88A-212ENST00000474059 A0A1W2PNM2 257 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 ERICH4A6NGS2 130 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms