RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ROPN1LQ96C74 230 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 PAGE5Q96GU1 130 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 ACY3Q96HD9 319 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 BMFQ96LC9 184 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 PLEKHF1Q96S99 279 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 SYT15Q9BQS2 421 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF649Q9BS31 505 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 TMEM9BQ9NQ34 198 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 ACER3Q9NUN7 267 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 CACNA1FO60840 1977 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 FRMPD3Q5JV73 1810 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 MAGI1Q96QZ7 1491 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 TNS3Q68CZ2 1445 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 ANKRD36BQ8N2N9 1353 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 A0A087WUU8 490 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 A0A0G2JLM5 398 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 LOC100131303A0A0U1RQF7 123 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 FAM236DA0A1B0GTK5 79 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 TEX50A0A1B0GTY4 177 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 LINC00862A6NCI5 91 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 PMS2P5A8MQ11 134 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 J3KT08 172 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 CORTO00230 105 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF207O43670 478 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 NPIPB7O75200 414 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 OR9G9P0C7N8 305 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 FAM236CP0DP71 79 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 SELEP16581 610 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 ATF1P18846 271 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 ORM2P19652 201 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 CXCL2P19875 107 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 KLK2P20151 261 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 NPY1RP25929 384 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 PFN2P35080 140 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 PPICP45877 212 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 GPM6AP51674 278 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 TAS2R30P59541 319 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 TNFAIP6P98066 277 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF92Q03936 586 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 PRDX1Q06830 199 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 RUNX3Q13761 415 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 TAB1Q15750 504 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 SPATA31B1PQ5VZV4 182 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF343Q6P1L6 599 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 SLC22A15Q8IZD6 547 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 SLC22A18ASQ8N1D0 253 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 GPR26Q8NDV2 337 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 TSTD1Q8NFU3 115 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 OR4M1Q8NGD0 313 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 THEM6Q8WUY1 208 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 DCAKDQ8WVC6 231 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 OR5P3Q8WZ94 311 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 TMEM54Q969K7 222 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 ARL11Q969Q4 196 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 CMBLQ96DG6 245 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 FMC1Q96HJ9 113 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 SLC35G5Q96KT7 338 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 CNBD2Q96M20 576 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 F2RL3Q96RI0 385 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 PITX2Q99697 317 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 MCHR1Q99705 422 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 ULBP3Q9BZM4 244 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 C20orf27Q9GZN8 174 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 OR51E2Q9H255 320 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 POPDC3Q9HBV1 291 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 GPR84Q9NQS5 396 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 MMP26Q9NRE1 261 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 TMEM30AQ9NV96 361 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF230Q9UIE0 474 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 VAX2Q9UIW0 290 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 UBIAD1Q9Y5Z9 338 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 RFNGQ9Y644 331 aa3.81□□□□□ -1.8
CCDC88A-210ENST00000468534 TRAV8-4A0A0B4J246 113 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 A0A0X1KG70 313 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 A0A1B0GV50 99 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 A0A1B0GVY2 172 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 SMIM31A0A1B0GVY4 71 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 LEUTXA8MZ59 168 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 LINC01619G3V211 115 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 TYROBPO43914 113 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 C6orf47O95873 294 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 P01737 135 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 SLC35G6P0C7Q6 338 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 LIFP15018 202 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 HIST1H1BP16401 226 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 RPL7P18124 248 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 RCC1P18754 421 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 TCN2P20062 427 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 RPS3P23396 243 aaKnown RBP eCLIP3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 BLVRBP30043 206 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 SRIP30626 198 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 MARCKSL1P49006 195 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 EMP1P54849 157 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 KRTAP10-3P60369 221 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 RGNQ15493 299 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 MORN2Q502X0 79 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 HSD17B12Q53GQ0 312 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 PABPC1L2AQ5JQF8 200 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 TMEM255AQ5JRV8 349 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 TMEM69Q5SWH9 247 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms