RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 KRTCAP2Q8N6L1 136 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 OR11G2Q8NGC1 345 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 OR2AE1Q8NHA4 323 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 KCTD4Q8WVF5 259 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 CLDN23Q96B33 292 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 HINT2Q9BX68 163 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 KCNIP2Q9NS61 270 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 LINC00588Q9Y4M8 146 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 KMT2EQ8IZD2 1858 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 ARGFXA6NJG6 315 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 C17orf98A8MV24 154 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 UBDO15205 165 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 SOX14O95416 240 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 CCNOP22674 350 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 PSMB9P28065 219 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 TSPOP30536 169 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 PYCR1P32322 319 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 GTF2H1P32780 548 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 RPA3P35244 121 aaPredicted RBP1.46□□□□□ -2.18
USP40-209ENST00000452724 CBX5P45973 191 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 RHOAP61586 193 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 DEFB103AP81534 67 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 FOXF1Q12946 379 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 TRAM1Q15629 374 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 TRIP13Q15645 432 aaPredicted RBP1.46□□□□□ -2.18
USP40-209ENST00000452724 SPIN4Q56A73 249 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 DGAT2L6Q6ZPD8 337 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 CLEC20AQ6ZU45 233 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 SSX6Q7RTT6 188 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 TCF23Q7RTU1 214 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 RBM45Q8IUH3 476 aaKnown RBP1.46□□□□□ -2.18
USP40-209ENST00000452724 TMBIM4Q9HC24 238 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 RBMX2Q9Y388 322 aaKnown RBP1.46□□□□□ -2.18
USP40-209ENST00000452724 HSPE1-MOB4S4R3N1 261 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 COL5A3P25940 1745 aaPredicted RBP1.46□□□□□ -2.18
USP40-209ENST00000452724 SORL1Q92673 2214 aa1.46□□□□□ -2.18
USP40-209ENST00000452724 FAM183AA6NL82 134 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 F5H5T6 163 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 TMEM250H0YL14 139 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 P0DMU3 169 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 FAM231AP0DMU4 169 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 FAM231CP0DMU5 169 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 ZNF3P17036 446 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 CRABP1P29762 137 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 NUP62P37198 522 aaPredicted RBP1.45□□□□□ -2.18
USP40-209ENST00000452724 TSPAN5P62079 268 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 VSNL1P62760 191 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 XIAPP98170 497 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 KRTAP13-4Q3LI77 160 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 LAMTOR1Q6IAA8 161 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 Q6ZT83 130 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 OLIG3Q7RTU3 272 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 OR5C1Q8NGR4 320 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 ZNF286AQ9HBT8 521 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 CLEC2DQ9UHP7 191 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 TBL2Q9Y4P3 447 aaKnown RBP1.45□□□□□ -2.18
USP40-209ENST00000452724 USH1CQ9Y6N9 552 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 ICE1Q9Y2F5 2266 aa1.45□□□□□ -2.18
USP40-209ENST00000452724 VWDEQ8N2E2 1590 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 MUC6Q6W4X9 2439 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 IGHV3OR15-7A0A075B7D8 119 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 TRAV8-2A0A0B4J237 113 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 A0A1W2PRG6 482 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 RAB19A4D1S5 217 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 RNASEK-C17orf49H0YIS7 233 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 CDIPTO14735 213 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 SLC25A20O43772 301 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 SHOX2O60902 331 aaPredicted RBP1.44□□□□□ -2.18
USP40-209ENST00000452724 IVLP07476 585 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 SPNP16150 400 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 APOFQ13790 326 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 PCOTHQ58A44 107 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 FAM183BPQ6ZVS7 135 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 SSX7Q7RTT5 188 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 OR10P1Q8NGE3 313 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 SPPL2BQ8TCT7 592 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 ZNF75CPQ92670 426 aaPredicted RBP1.44□□□□□ -2.18
USP40-209ENST00000452724 LRRC39Q96DD0 335 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 BCL2L14Q9BZR8 327 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 AICDAQ9GZX7 198 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 RAB1BQ9H0U4 201 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 ALX4Q9H161 411 aaPredicted RBP1.44□□□□□ -2.18
USP40-209ENST00000452724 AK9Q5TCS8 1911 aa1.44□□□□□ -2.18
USP40-209ENST00000452724 SYNRGQ9UMZ2 1314 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 COL11A1P12107 1806 aaPredicted RBP1.43□□□□□ -2.18
USP40-209ENST00000452724 HSPA13P48723 471 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 MP68P56378 58 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 C18orf21Q32NC0 220 aaPredicted RBP1.43□□□□□ -2.18
USP40-209ENST00000452724 TMEM176BQ3YBM2 270 aaPredicted RBP1.43□□□□□ -2.18
USP40-209ENST00000452724 Q6ZRU5 148 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 FAM19A3Q7Z5A8 133 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 ACBD4Q8NC06 268 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 LRRC20Q8TCA0 184 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 GPR119Q8TDV5 335 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 PDCD6IPQ8WUM4 868 aaKnown RBP1.43□□□□□ -2.18
USP40-209ENST00000452724 TAPBPLQ9BX59 468 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 EBPLQ9BY08 206 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 PRRG3Q9BZD7 231 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 TAS2R9Q9NYW1 312 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 NXT1Q9UKK6 140 aaKnown RBP1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms