RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 MALRD1Q5VYJ5 2156 aa12.16□□□□□ -0.46
TNF-208ENST00000449264 NDUFS8O00217 210 aa12.15□□□□□ -0.46
TNF-208ENST00000449264 ORC5O43913 435 aa12.15□□□□□ -0.46
TNF-208ENST00000449264 UPK1BO75841 260 aa12.15□□□□□ -0.46
TNF-208ENST00000449264 P2RX3P56373 397 aa12.15□□□□□ -0.46
TNF-208ENST00000449264 SEC61A1P61619 476 aaKnown RBP12.15□□□□□ -0.46
TNF-208ENST00000449264 ZNF57Q68EA5 555 aaPredicted RBP12.15□□□□□ -0.46
TNF-208ENST00000449264 OR52W1Q6IF63 320 aa12.15□□□□□ -0.46
TNF-208ENST00000449264 LRRC75A-AS1Q8N1F1 130 aa12.15□□□□□ -0.46
TNF-208ENST00000449264 NEIL1Q96FI4 390 aaPredicted RBP12.15□□□□□ -0.46
TNF-208ENST00000449264 TRAPPC2LQ9UL33 140 aa12.15□□□□□ -0.46
TNF-208ENST00000449264 RBMX2Q9Y388 322 aaKnown RBP12.15□□□□□ -0.46
TNF-208ENST00000449264 FLNBO75369 2602 aaKnown RBP12.15□□□□□ -0.47
TNF-208ENST00000449264 MED13LQ71F56 2210 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 ODAMA1E959 279 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 H7C1Q1 480 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 MT-ND4P03905 459 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 DTYMKP23919 212 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 RCVRNP35243 200 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 GLP1RP43220 463 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 CBX5P45973 191 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 DSCR9P59020 149 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 Q5PR19 223 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 SLC35E4Q6ICL7 350 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 DNM1P46Q6ZS02 220 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 MBD6Q96DN6 1003 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 OCSTAMPQ9BR26 566 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 DCTN5Q9BTE1 182 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 RIMS4Q9H426 269 aaPredicted RBP12.14□□□□□ -0.47
TNF-208ENST00000449264 PATZ1Q9HBE1 687 aaKnown RBP12.14□□□□□ -0.47
TNF-208ENST00000449264 CLN8Q9UBY8 286 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 PDZD2O15018 2839 aa12.14□□□□□ -0.47
TNF-208ENST00000449264 RCC1P18754 421 aaPredicted RBP12.13□□□□□ -0.47
TNF-208ENST00000449264 HLA-DMAP28067 261 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 STEAP3Q658P3 488 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 TOMM5Q8N4H5 51 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 BEST4Q8NFU0 473 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 CLDND2Q8NHS1 167 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 MRGPRDQ8TDS7 321 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 SNAPC3Q92966 411 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 NOTCH2Q04721 2471 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 ABCA2Q9BZC7 2435 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 IGKV1D-8A0A087WSZ0 117 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 FUOMA2VDF0 154 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 IGHV2-5P01817 119 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 WNT2P09544 360 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 GNB2P62879 340 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 IFITM3Q01628 133 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 DCTN2Q13561 401 aaKnown RBP12.13□□□□□ -0.47
TNF-208ENST00000449264 ZNF841Q6ZN19 808 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 MOB1BQ7L9L4 216 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 HOGA1Q86XE5 327 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 GAPTQ8N292 157 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 PRR18Q8N4B5 295 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 OR13A1Q8NGR1 328 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 UBALD1Q8TB05 177 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 ZNF286AQ9HBT8 521 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 Q9N2K0 584 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 C19orf12Q9NSK7 152 aa12.13□□□□□ -0.47
TNF-208ENST00000449264 ARHGAP32A7KAX9 2087 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 YLPM1P49750 1951 aaKnown RBP12.12□□□□□ -0.47
TNF-208ENST00000449264 TRBV6-6A0A0A6YYG2 114 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 IGHV4-61A0A0C4DH41 118 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 VWC2LB2RUY7 222 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 F5H0A9 414 aaPredicted RBP12.12□□□□□ -0.47
TNF-208ENST00000449264 PHF1O43189 567 aaPredicted RBP12.12□□□□□ -0.47
TNF-208ENST00000449264 CSF1P09603 554 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 ERP29P30040 261 aaKnown RBP12.12□□□□□ -0.47
TNF-208ENST00000449264 ARPC4P59998 168 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 RPL31P62899 125 aaKnown RBP12.12□□□□□ -0.47
TNF-208ENST00000449264 PAX5Q02548 391 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 SSBP1Q04837 148 aaKnown RBP12.12□□□□□ -0.47
TNF-208ENST00000449264 ESCO2Q56NI9 601 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 WDR25Q64LD2 544 aaPredicted RBP12.12□□□□□ -0.47
TNF-208ENST00000449264 C5orf24Q7Z6I8 188 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 FAM185AQ8N0U4 392 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 SSBP3Q9BWW4 388 aaPredicted RBP12.12□□□□□ -0.47
TNF-208ENST00000449264 ANAPC10Q9UM13 185 aa12.12□□□□□ -0.47
TNF-208ENST00000449264 ANKRD20A5PA0PJZ0 165 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 ZNF736B4DX44 427 aaPredicted RBP12.11□□□□□ -0.47
TNF-208ENST00000449264 CD3DP04234 171 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 GSTT2BP0CG30 244 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 SSTR5P35346 364 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 TAS2R19P59542 299 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 AP3S2P59780 193 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 HLA-DRB3P79483 266 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 KLF9Q13886 244 aaPredicted RBP12.11□□□□□ -0.47
TNF-208ENST00000449264 CHRFAM7AQ494W8 412 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 FAAP20Q6NZ36 180 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 ZNF880Q6PDB4 577 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 BTN2A1Q7KYR7 527 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 LYSMD2Q8IV50 215 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 RAB39BQ96DA2 213 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 TAS2R8Q9NYW2 309 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 CREBBPQ92793 2442 aa12.11□□□□□ -0.47
TNF-208ENST00000449264 TRGV10A0A0A0MS01 117 aa12.1□□□□□ -0.47
TNF-208ENST00000449264 M0QYG6 137 aa12.1□□□□□ -0.47
TNF-208ENST00000449264 ECDO95905 644 aaPredicted RBP12.1□□□□□ -0.47
TNF-208ENST00000449264 PMP2P02689 132 aa12.1□□□□□ -0.47
TNF-208ENST00000449264 SLC25A16P16260 332 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms