RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 LYRM1O43325 122 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 ORC5O43913 435 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 UTS2O95399 124 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 PAHP00439 452 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 IGHV3-13P01766 116 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 HLA-DQB1P01920 261 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 CLPSP04118 112 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 ERCC1P07992 297 aaPredicted RBP3.15□□□□□ -1.91
VPS29-202ENST00000447578 HOXD4P09016 255 aaPredicted RBP3.15□□□□□ -1.91
VPS29-202ENST00000447578 SPI1P17947 270 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 RAB3BP20337 219 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 NPR2P20594 1047 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 HLA-DMAP28067 261 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 GRPRP30550 384 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 NUDT1P36639 197 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 AQP2P41181 271 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 PTGDSP41222 190 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 CAPZBP47756 277 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 GABRA4P48169 554 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 RAB9AP51151 201 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 GPM6AP51674 278 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 RAB25P57735 213 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 ACTA2P62736 377 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 ACTG2P63267 376 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 GGTLC2Q14390 218 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 GNMTQ14749 295 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 CDK5R1Q15078 307 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 ELOCQ15369 112 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 NDUFA5Q16718 116 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 DEFB133Q30KQ1 61 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 SLC25A35Q3KQZ1 300 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 SFXN4Q6P4A7 337 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 PAMR1Q6UXH9 720 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 C2orf66Q6UXQ4 117 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 SSX9Q7RTT3 188 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 LRRC28Q86X40 367 aaPredicted RBP3.15□□□□□ -1.91
VPS29-202ENST00000447578 NAXDQ8IW45 347 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 PRR22Q8IZ63 422 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 SYS1Q8N2H4 156 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 FTMTQ8N4E7 242 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 MS4A15Q8N5U1 240 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 ZNF321PQ8N8H1 164 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 ZNF615Q8N8J6 731 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 LRRC75AQ8NAA5 344 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 OR7G1Q8NGA0 311 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 OR5H6Q8NGV6 325 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 OR6K6Q8NGW6 343 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 ZNF563Q8TA94 476 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 PLPPR1Q8TBJ4 325 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 SLC7A6Q92536 515 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 RASL10AQ92737 203 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 TSLPQ969D9 159 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 SLC35B4Q969S0 331 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 SMIM19Q96E16 107 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 MRPL48Q96GC5 212 aaKnown RBP3.15□□□□□ -1.91
VPS29-202ENST00000447578 PGLYRP4Q96LB8 373 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 PGLYRP3Q96LB9 341 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 NOL4LQ96MY1 436 aaPredicted RBP3.15□□□□□ -1.91
VPS29-202ENST00000447578 SYNDIG1Q9H7V2 258 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 RBFOX1Q9NWB1 397 aaKnown RBP3.15□□□□□ -1.91
VPS29-202ENST00000447578 MRPL22Q9NWU5 206 aaKnown RBP3.15□□□□□ -1.91
VPS29-202ENST00000447578 GNG8Q9UK08 70 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 ZNF337Q9Y3M9 751 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 CHTOPQ9Y3Y2 248 aaKnown RBP3.15□□□□□ -1.91
VPS29-202ENST00000447578 ALG5Q9Y673 324 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 CACNG2Q9Y698 323 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 MTCH2Q9Y6C9 303 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 ALPK3Q96L96 1907 aa3.15□□□□□ -1.91
VPS29-202ENST00000447578 TRAV6A0A075B6T7 132 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 TRAV1-2A0A0B4J238 106 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 A0A1W2PNU3 283 aaPredicted RBP3.14□□□□□ -1.91
VPS29-202ENST00000447578 TMEM72A0PK05 275 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 TLCD2A6NGC4 264 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 OR6C70A6NIJ9 312 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 INMT-MINDY4F8WBC2 141 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 SMLR1H3BR10 107 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 TEX46H3BTG2 121 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 PDCD5O14737 125 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 MBTPS2O43462 519 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 AKR7A2O43488 359 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 SC5DO75845 299 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 GATBO75879 557 aaKnown RBP3.14□□□□□ -1.91
VPS29-202ENST00000447578 ARL6IP5O75915 188 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 OR2B3O76000 313 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 OR2F2O95006 317 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 RPP14O95059 124 aaKnown RBP3.14□□□□□ -1.91
VPS29-202ENST00000447578 DUSP14O95147 198 aaKnown RBP3.14□□□□□ -1.91
VPS29-202ENST00000447578 KLK3P07288 261 aaPredicted RBP3.14□□□□□ -1.91
VPS29-202ENST00000447578 CD3GP09693 182 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 OR8U8P0C7N1 319 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 RBMY1CP0DJD4 496 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 ATF1P18846 271 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 IL12BP29460 328 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 RORAP35398 523 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 SRP9P49458 86 aaKnown RBP3.14□□□□□ -1.91
VPS29-202ENST00000447578 SLC25A1P53007 311 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 PRPS1P60891 318 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 PITPNAQ00169 270 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 GPR176Q14439 515 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 CDK10Q15131 360 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms