RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 TMED9Q9BVK6 235 aa1.79□□□□□ -2.12
VPS41-207ENST00000439468 HINT2Q9BX68 163 aa1.79□□□□□ -2.12
VPS41-207ENST00000439468 TBL1XR1Q9BZK7 514 aa1.79□□□□□ -2.12
VPS41-207ENST00000439468 STMN3Q9NZ72 180 aa1.79□□□□□ -2.12
VPS41-207ENST00000439468 TFR2Q9UP52 801 aa1.79□□□□□ -2.12
VPS41-207ENST00000439468 KLF13Q9Y2Y9 288 aaPredicted RBP1.79□□□□□ -2.12
VPS41-207ENST00000439468 ANKRD30AQ9BXX3 1397 aa1.79□□□□□ -2.12
VPS41-207ENST00000439468 DUOX1Q9NRD9 1551 aa1.79□□□□□ -2.12
VPS41-207ENST00000439468 ARAP2Q8WZ64 1704 aa1.79□□□□□ -2.12
VPS41-207ENST00000439468 EP300Q09472 2414 aaPredicted RBP1.79□□□□□ -2.12
VPS41-207ENST00000439468 IGF2RP11717 2491 aa1.79□□□□□ -2.12
VPS41-207ENST00000439468 POLQO75417 2590 aa1.79□□□□□ -2.12
VPS41-207ENST00000439468 SPENQ96T58 3664 aaKnown RBP1.78□□□□□ -2.12
VPS41-207ENST00000439468 CEP295Q9C0D2 2601 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 CNOT1A5YKK6 2376 aaKnown RBP1.78□□□□□ -2.12
VPS41-207ENST00000439468 OTOGLQ3ZCN5 2332 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 PTPRSQ13332 1948 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 PLXNB3Q9ULL4 1909 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 MAP3K19Q56UN5 1328 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 MROH5Q6ZUA9 1318 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 M0R1B8 84 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 RNF113AO15541 343 aaKnown RBP1.78□□□□□ -2.12
VPS41-207ENST00000439468 OR5AL1P0C617 328 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 MPV17P39210 176 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 RGS6P49758 472 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 TAS2R60P59551 318 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 LAMTOR4Q0VGL1 99 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 SPINT4Q6UDR6 99 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 CASP12Q6UXS9 341 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 FAM58AQ8N1B3 248 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 OR4D6Q8NGJ1 314 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 OR52N1Q8NH53 320 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 PHF10Q8WUB8 498 aaKnown RBP1.78□□□□□ -2.12
VPS41-207ENST00000439468 RBPMSQ93062 196 aaKnown RBP1.78□□□□□ -2.12
VPS41-207ENST00000439468 ADTRPQ96IZ2 230 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 PDCD1LG2Q9BQ51 273 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 SEC22CQ9BRL7 303 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 ZNF649Q9BS31 505 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 MRPL20Q9BYC9 149 aaKnown RBP1.78□□□□□ -2.12
VPS41-207ENST00000439468 COA1Q9GZY4 146 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 SLC38A1Q9H2H9 487 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 C6orf50Q9HD87 102 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 IL37Q9NZH6 218 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 CFL2Q9Y281 166 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 NF1P21359 2839 aa1.78□□□□□ -2.12
VPS41-207ENST00000439468 SPTAN1Q13813 2472 aaKnown RBP1.78□□□□□ -2.12
VPS41-207ENST00000439468 LOC285556D6RIA3 1793 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 SPG11Q96JI7 2443 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 TONSLQ96HA7 1378 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 SLC5A10A0PJK1 596 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 NRASP01111 189 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 HRASP01112 189 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 KRASP01116 189 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 IGLV7-43P04211 117 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 PFN1P07737 140 aaKnown RBP1.77□□□□□ -2.13
VPS41-207ENST00000439468 OR5AC1P0C628 307 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 M6PRP20645 277 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 DEKP35659 375 aaKnown RBP1.77□□□□□ -2.13
VPS41-207ENST00000439468 NUP62P37198 522 aaPredicted RBP1.77□□□□□ -2.13
VPS41-207ENST00000439468 TGM4P49221 684 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 PSMB2P49721 201 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 RPS11P62280 158 aaKnown RBP eCLIP1.77□□□□□ -2.13
VPS41-207ENST00000439468 RPL10AP62906 217 aaKnown RBP1.77□□□□□ -2.13
VPS41-207ENST00000439468 ATP5G2Q06055 141 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 MAPRE2Q15555 327 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 LRRC26Q2I0M4 334 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 TMEM69Q5SWH9 247 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 PID1Q7Z2X4 250 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 LRRC8AQ8IWT6 810 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 PDCL2Q8N4E4 241 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 CCNYL1Q8N7R7 359 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 LINC00304Q8N9R0 145 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 NT5CQ8TCD5 201 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 ZFAND1Q8TCF1 268 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 ITLN2Q8WWU7 325 aaPredicted RBP1.77□□□□□ -2.13
VPS41-207ENST00000439468 ASB7Q9H672 318 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 VSIRQ9H7M9 311 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 TMEM38BQ9NVV0 291 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 SDHAF2Q9NX18 166 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 STX18Q9P2W9 335 aaKnown RBP1.77□□□□□ -2.13
VPS41-207ENST00000439468 PRO0628Q9UI54 55 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 ZNF229Q9UJW7 825 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 RAB23Q9ULC3 237 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 RBMX2Q9Y388 322 aaKnown RBP1.77□□□□□ -2.13
VPS41-207ENST00000439468 ZNF706Q9Y5V0 76 aaPredicted RBP1.77□□□□□ -2.13
VPS41-207ENST00000439468 UBR2Q8IWV8 1755 aa1.77□□□□□ -2.13
VPS41-207ENST00000439468 SVILO95425 2214 aa1.76□□□□□ -2.13
VPS41-207ENST00000439468 SHROOM3Q8TF72 1996 aa1.76□□□□□ -2.13
VPS41-207ENST00000439468 MIA3Q5JRA6 1907 aa1.76□□□□□ -2.13
VPS41-207ENST00000439468 CSMD1Q96PZ7 3565 aa1.76□□□□□ -2.13
VPS41-207ENST00000439468 COL11A1P12107 1806 aaPredicted RBP1.76□□□□□ -2.13
VPS41-207ENST00000439468 PRMT5O14744 637 aaPredicted RBP1.76□□□□□ -2.13
VPS41-207ENST00000439468 HLA-GP17693 338 aa1.76□□□□□ -2.13
VPS41-207ENST00000439468 TUFMP49411 452 aaKnown RBP1.76□□□□□ -2.13
VPS41-207ENST00000439468 PRKCDQ05655 676 aa1.76□□□□□ -2.13
VPS41-207ENST00000439468 STK38Q15208 465 aa1.76□□□□□ -2.13
VPS41-207ENST00000439468 ELOCQ15369 112 aa1.76□□□□□ -2.13
VPS41-207ENST00000439468 TNXAQ16473 311 aa1.76□□□□□ -2.13
VPS41-207ENST00000439468 KRTAP21-3Q3LHN1 58 aa1.76□□□□□ -2.13
VPS41-207ENST00000439468 CDNFQ49AH0 187 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms