RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 IGKV3D-15A0A087WSY6 115 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 IGKV3-15P01624 115 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 ID4P47928 161 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 WDR73Q6P4I2 378 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 CLEC18BQ6UXF7 455 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 C16orf82Q7Z2V1 217 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 SPICQ8N5J4 248 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 TCTEX1D1Q8N7M0 179 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 GPX7Q96SL4 187 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-206ENST00000429895 SOSTQ9BQB4 213 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 A0A1W2PQD3 144 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 H3BVH4 76 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 ZNF137PP52743 207 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 SNRPEP62304 92 aaKnown RBP13.5□□□□□ -0.25
PTPRF-206ENST00000429895 ZNF552Q9H707 407 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-206ENST00000429895 ANKRD20A5PA0PJZ0 165 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 RBFOX3A6NFN3 312 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 STARD4Q96DR4 205 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 PERPQ96FX8 193 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 DUXBA0A1W2PPF3 345 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 IGSF23A1L1A6 192 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 GZMHP20718 246 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 LSM6P62312 80 aaKnown RBP13.49□□□□□ -0.25
PTPRF-206ENST00000429895 HLA-DRB3P79483 266 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 ROM1Q03395 351 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 CLEC2AQ6UVW9 174 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 BHLHA9Q7RTU4 235 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 OR2J1Q9GZK6 312 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 SLIRPQ9GZT3 109 aaKnown RBP13.49□□□□□ -0.25
PTPRF-206ENST00000429895 MANBALQ9NQG1 85 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 ECM29Q5VYK3 1845 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 PPIAL4EA0A075B759 164 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 PPIAL4DF5H284 164 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 PPIAL4FP0DN26 164 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 LIFP15018 202 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 MPV17LQ2QL34 196 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 TMEM38BQ9NVV0 291 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 PPIAL4AQ9Y536 164 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 PAPPA2Q9BXP8 1791 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 ZFP36L2P47974 494 aaKnown RBP13.49□□□□□ -0.25
PTPRF-206ENST00000429895 PRNTQ86SH4 94 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 GMPPAQ96IJ6 420 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-206ENST00000429895 TMEM204Q9BSN7 226 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 SRSF10O75494 262 aaKnown RBP13.49□□□□□ -0.25
PTPRF-206ENST00000429895 PLAURQ03405 335 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 MGAT2Q10469 447 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 ZAR1Q86SH2 424 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 OR8A1Q8NGG7 326 aa13.49□□□□□ -0.25
PTPRF-206ENST00000429895 PKD1L3Q7Z443 1732 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 IGHV3-72A0A0B4J1Y9 119 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 HIST1H1EP10412 219 aaKnown RBP13.48□□□□□ -0.25
PTPRF-206ENST00000429895 CD82P27701 267 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 RIGQ13278 110 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 NAT8Q9UHE5 227 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 PRNDQ9UKY0 176 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 TPRX1Q8N7U7 411 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 OR51B2Q9Y5P1 312 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 PSG2P11465 335 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 HOXC8P31273 242 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 PPP1CCP36873 323 aaKnown RBP13.48□□□□□ -0.25
PTPRF-206ENST00000429895 RPL29P47914 159 aaKnown RBP13.48□□□□□ -0.25
PTPRF-206ENST00000429895 HIST3H3Q16695 136 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 FBXW9Q5XUX1 488 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 SNRNP40Q96DI7 357 aaKnown RBP13.48□□□□□ -0.25
PTPRF-206ENST00000429895 PIPOXQ9P0Z9 390 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 XAF1Q6GPH4 301 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 ASB5Q8WWX0 329 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 CCL13Q99616 98 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 LPAR3Q9UBY5 353 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 LOC389332A0A1B0GUA5 103 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 J3QT63 122 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 PPYP01298 95 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 KIR2DL1P43626 348 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-206ENST00000429895 KIR2DL2P43627 348 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-206ENST00000429895 DLX1P56177 255 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 LRP11Q86VZ4 500 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 OR2D3Q8NGH3 330 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 OR10G8Q8NGN5 311 aa13.48□□□□□ -0.25
PTPRF-206ENST00000429895 CGB1A6NKQ9 187 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 SFTPCP11686 197 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 CRISP2P16562 243 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 SULT1A2P50226 295 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 STPG1Q5TH74 334 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 INO80CQ6PI98 192 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-206ENST00000429895 OR4D11Q8NGI4 311 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 DUSP15Q9H1R2 295 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-206ENST00000429895 RNF122Q9H9V4 155 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 LAMB1P07942 1786 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 MFSD2BA6NFX1 497 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 SYNGR1O43759 233 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 VDAC1P21796 283 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 P2RY1P47900 373 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 RPL31P62899 125 aaKnown RBP13.47□□□□□ -0.25
PTPRF-206ENST00000429895 SRSF9Q13242 221 aaKnown RBP eCLIP13.47□□□□□ -0.25
PTPRF-206ENST00000429895 C9orf40Q8IXQ3 194 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 MRPL24Q96A35 216 aaKnown RBP13.47□□□□□ -0.25
PTPRF-206ENST00000429895 AURKAIP1Q9NWT8 199 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-206ENST00000429895 SPANXN1Q5VSR9 72 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 LRRC75AQ8NAA5 344 aa13.47□□□□□ -0.25
PTPRF-206ENST00000429895 DPH3Q96FX2 82 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms