RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 PNOCQ13519 176 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 CEACAM16Q2WEN9 425 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 SLC36A2Q495M3 483 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 SMUG1Q53HV7 270 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 MPV17L2Q567V2 206 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 FAM78AQ5JUQ0 283 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 CALHM1Q8IU99 346 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 WDFY1Q8IWB7 410 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 C2orf73Q8N5S3 287 aaPredicted RBP2.35□□□□□ -2.03
USP40-204ENST00000427947 DRAM1Q8N682 238 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 OR4M2Q8NGB6 313 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 OR4M1Q8NGD0 313 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 OR5L1Q8NGL2 311 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 HGDQ93099 445 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 YIPF6Q96EC8 236 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 SNF8Q96H20 258 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 KCNS1Q96KK3 526 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 MRPS26Q9BYN8 205 aaKnown RBP2.35□□□□□ -2.03
USP40-204ENST00000427947 ARL6Q9H0F7 186 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 METTL9Q9H1A3 318 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 HMG20AQ9NP66 347 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 FAM206AQ9NX38 181 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 FARSAQ9Y285 508 aaKnown RBP2.35□□□□□ -2.03
USP40-204ENST00000427947 TBL2Q9Y4P3 447 aaKnown RBP2.35□□□□□ -2.03
USP40-204ENST00000427947 TMEM14AQ9Y6G1 99 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 KDM5BQ9UGL1 1544 aa2.35□□□□□ -2.03
USP40-204ENST00000427947 STAB2Q8WWQ8 2551 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 NUP214P35658 2090 aaPredicted RBP2.34□□□□□ -2.03
USP40-204ENST00000427947 CSMD2Q7Z408 3487 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 TENM3Q9P273 2699 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 TMEM223A0PJW6 202 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 ZNF233A6NK53 670 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 TMEM210A6NLX4 147 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 LRRN3E7EW58 273 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 CCRL2O00421 344 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 GPR171O14626 319 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 BIRC5O15392 142 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 SLC31A1O15431 190 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 RBFOX2O43251 390 aaKnown RBP eCLIP2.34□□□□□ -2.03
USP40-204ENST00000427947 SSNA1O43805 119 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 CCDC22O60826 627 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 FOXH1O75593 365 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 REM1O75628 298 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 MT-ND4P03905 459 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 RPS17P08708 135 aaKnown RBP2.34□□□□□ -2.03
USP40-204ENST00000427947 NQO1P15559 274 aaKnown RBP2.34□□□□□ -2.03
USP40-204ENST00000427947 SPNP16150 400 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 HIST1H1CP16403 213 aaKnown RBP2.34□□□□□ -2.03
USP40-204ENST00000427947 ZNF7P17097 686 aaPredicted RBP2.34□□□□□ -2.03
USP40-204ENST00000427947 CELP19835 753 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 TSPOP30536 169 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 ADORA1P30542 326 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 GCLMP48507 274 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 GRB2P62993 217 aaKnown RBP2.34□□□□□ -2.03
USP40-204ENST00000427947 PPIDQ08752 370 aaKnown RBP2.34□□□□□ -2.03
USP40-204ENST00000427947 LY6EQ16553 131 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 RGS21Q2M5E4 152 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 GOLGA7BQ2TAP0 167 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 SLC25A35Q3KQZ1 300 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 CLEC12AQ5QGZ9 265 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 SAPCD1Q5SSQ6 148 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 OGFRL1Q5TC84 451 aaPredicted RBP2.34□□□□□ -2.03
USP40-204ENST00000427947 Q5W150 140 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 XKRXQ6PP77 449 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 CASP12Q6UXS9 341 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 UBALD2Q8IYN6 164 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 KRT222Q8N1A0 295 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 ZNF615Q8N8J6 731 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 OR5T1Q8NG75 326 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 OR6K3Q8NGY3 331 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 COQ8AQ8NI60 647 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 RNF133Q8WVZ7 376 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 ANKRD7Q92527 254 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 S100PBPQ96BU1 408 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 LINC00477Q96M19 166 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 KCTD7Q96MP8 289 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 CAMK2N2Q96S95 79 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 ZNF382Q96SR6 550 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 HBEGFQ99075 208 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 SCRT1Q9BWW7 348 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 GGTLC1Q9BX51 225 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 UGT2B28Q9BY64 529 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 FGF23Q9GZV9 251 aaPredicted RBP2.34□□□□□ -2.03
USP40-204ENST00000427947 MFSD1Q9H3U5 465 aa2.34□□□□□ -2.03
USP40-204ENST00000427947 SPANXB1Q9NS25 103 aaPredicted RBP2.34□□□□□ -2.03
USP40-204ENST00000427947 RBM22Q9NW64 420 aaKnown RBP eCLIP2.34□□□□□ -2.03
USP40-204ENST00000427947 TMEM131LA2VDJ0 1609 aa2.34□□□□□ -2.04
USP40-204ENST00000427947 ZCCHC11Q5TAX3 1644 aaKnown RBP2.34□□□□□ -2.04
USP40-204ENST00000427947 NPHP4O75161 1426 aaPredicted RBP2.34□□□□□ -2.04
USP40-204ENST00000427947 NCOA1Q15788 1441 aa2.34□□□□□ -2.04
USP40-204ENST00000427947 IFT140Q96RY7 1462 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 IGLV1-50A0A075B6I6 118 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 A0A0G2JMP0 313 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 A0A0X1KG70 313 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 C7orf66A4D0T2 115 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 C5orf63A6NC05 138 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 OR2AT4A6NND4 320 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 COLCA2A8K830 154 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 F5H5K5 113 aa2.33□□□□□ -2.04
USP40-204ENST00000427947 UPK2O00526 184 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms