RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ZNF420Q8TAQ5 688 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 CNIH3Q8TBE1 160 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 FCAMRQ8WWV6 532 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 GGHQ92820 318 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TMEM80Q96HE8 168 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 FAM71F1Q96KD3 344 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TECTBQ96PL2 329 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 GAL3ST1Q99999 423 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF649Q9BS31 505 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 PAPOLGQ9BWT3 736 aaKnown RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TTTY10Q9BZA0 68 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TLNRD1Q9H1K6 362 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF665Q9H7R5 613 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 UFSP2Q9NUQ7 469 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 C1orf123Q9NWV4 160 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 DCAF16Q9NXF7 216 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 CNOT2Q9NZN8 540 aaKnown RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 MIOXQ9UGB7 285 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 HHLA2Q9UM44 414 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 DIMT1Q9UNQ2 313 aaKnown RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 PIGLQ9Y2B2 252 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 CAB39Q9Y376 341 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 EXOSC1Q9Y3B2 195 aaKnown RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 F8P00451 2351 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 MED13LQ71F56 2210 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TEX15Q9BXT5 2789 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TRAV38-1A0A0B4J264 116 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 A0A1W2PPI3 338 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ISPDA4D126 451 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 OR4C45A6NMZ5 311 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 J3QLI3 93 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 GATBO75879 557 aaKnown RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ATP6V1G2O95670 118 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 CYB5R3P00387 301 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 PRSS1P07477 247 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 MSMBP08118 114 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 CCDC159P0C7I6 412 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 MUC1P15941 1255 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 MYL12AP19105 171 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 IL2RGP31785 369 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 KIR3DL2P43630 455 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 GLIPR1P48060 266 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TGM4P49221 684 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ST3GAL4Q11206 333 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF154Q13106 437 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 RBM39Q14498 530 aaKnown RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF404Q494X3 552 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 C6orf52Q5T4I8 152 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 PRAMEF6Q5VXH4 476 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 RNLSQ5VYX0 342 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TEX36Q5VZQ5 186 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 RPL22L1Q6P5R6 122 aaKnown RBP2.04□□□□□ -2.08
VPS13A-208ENST00000423463 UTS2BQ765I0 119 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF573Q86YE8 665 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 PRSS35Q8N3Z0 413 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF676Q8N7Q3 588 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 OR52N1Q8NH53 320 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 SETD6Q8TBK2 473 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 LRRC29Q8WV35 223 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 PP6455Q8WZ26 134 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 MYDGFQ969H8 173 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TMEM186Q96B77 213 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 SPSB1Q96BD6 273 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 PELI1Q96FA3 418 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 C4orf36Q96KX1 117 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 SGK494Q96LW2 274 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 C17orf77Q96MU5 243 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TMEM246Q9BRR3 403 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 COMMD4Q9H0A8 199 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 OR51I2Q9H344 312 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 NARFLQ9H6Q4 476 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF696Q9H7X3 374 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 NEK6Q9HC98 313 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 ACOXLQ9NUZ1 547 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 BABAM2Q9NXR7 383 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 SCN3BQ9NY72 215 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 RASL12Q9NYN1 266 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 PSORS1C1Q9UIG5 152 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 SLC7A11Q9UPY5 501 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TPRKBQ9Y3C4 175 aa2.04□□□□□ -2.08
VPS13A-208ENST00000423463 TRBV2A0A0J9YWF9 115 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 IGHV3-64DA0A0J9YX35 117 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 LOC107986453A0A1B0GWG9 222 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 PQLC2LA1A4F0 135 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 ANKRD61A6NGH8 418 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 OOEPA6NGQ2 149 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 TMEM212A6NML5 194 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 PMS2P5A8MQ11 134 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 CEACAM18A8MTB9 384 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 A8MXK9 166 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 SRRM5B3KS81 715 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 ZNF732B4DXR9 585 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 J3QT63 122 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 CDIPTO14735 213 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 NOS1APO75052 506 aaPredicted RBP2.03□□□□□ -2.08
VPS13A-208ENST00000423463 MT-ND2P03891 347 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 GNAO1P09471 354 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 RPS2P15880 293 aaKnown RBP2.03□□□□□ -2.08
VPS13A-208ENST00000423463 ATF1P18846 271 aa2.03□□□□□ -2.08
VPS13A-208ENST00000423463 HNF1AP20823 631 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms