RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NCKAP5O14513 1909 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 BTBD17A6NE02 478 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 IFITM10A6NMD0 228 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 TNFSF12O43508 249 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 SCAF4O95104 1147 aaKnown RBP10.89□□□□□ -0.67
SHMT1-205ENST00000395684 SLC34A2O95436 690 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 CXCL1P09341 107 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 VDAC1P21796 283 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 S100PP25815 95 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 UCP1P25874 307 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 HAAOP46952 286 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 PAX9P55771 341 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 DLK1P80370 383 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 KIAA0141Q14154 515 aaPredicted RBP10.89□□□□□ -0.67
SHMT1-205ENST00000395684 LYSMD4Q5XG99 296 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 IL22RA1Q8N6P7 574 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 OR56B2PQ8NGI1 322 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 COLQQ9Y215 455 aaPredicted RBP10.89□□□□□ -0.67
SHMT1-205ENST00000395684 RNF115Q9Y4L5 304 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 TRAPPC6AO75865 159 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 TUSC2O75896 110 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 CCL2P13500 99 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 HOXA5P20719 270 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 UBE2KP61086 200 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 ELOBQ15370 118 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 COLCA1Q6ZS62 124 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF429Q86V71 674 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 LURAP1LQ8IV03 231 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 OR2V1Q8NHB1 315 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 Q8WTZ3 238 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 SGCZQ96LD1 299 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 GGACTQ9BVM4 153 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 PRDM14Q9GZV8 571 aa10.89□□□□□ -0.67
SHMT1-205ENST00000395684 UNKLQ9H9P5 680 aaKnown RBP10.89□□□□□ -0.67
SHMT1-205ENST00000395684 LRRC3CA6NJW4 275 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 C9J4A7 227 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 P04436 131 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 CCNOP22674 350 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 GPM6AP51674 278 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 ERVFRD-1P60508 538 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 CLDND2Q8NHS1 167 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 CPNE4Q96A23 557 aaPredicted RBP10.88□□□□□ -0.67
SHMT1-205ENST00000395684 GNPNAT1Q96EK6 184 aaPredicted RBP10.88□□□□□ -0.67
SHMT1-205ENST00000395684 ABHD14BQ96IU4 210 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 BCL2L14Q9BZR8 327 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 MTCH1Q9NZJ7 389 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 TAAR3PQ9P1P4 343 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 URGCP-MRPS24S4R325 110 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 TRBV23-1A0A0A0MS06 115 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 A0A0G2JRQ6 117 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A10PA6NDY2 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A18PA6NE21 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A16PA6NEW6 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A20PA6NIJ5 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A8PA6NJQ4 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A7PA6NKC0 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A22PA8MWA6 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A12PA8MX19 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A5PA8MXJ8 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A23PA8MXZ1 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A15PP0C7V4 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A13PP0C7W8 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A14PP0C7W9 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FAM90A24PP0C7X0 464 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 FGF12P61328 243 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 RPS18P62269 152 aaKnown RBP10.88□□□□□ -0.67
SHMT1-205ENST00000395684 PRDX4Q13162 271 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 SRSF7Q16629 238 aaKnown RBP eCLIP10.88□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF506Q5JVG8 444 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 POM121Q96HA1 1249 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 REPIN1Q9BWE0 567 aaKnown RBP10.88□□□□□ -0.67
SHMT1-205ENST00000395684 TINAGQ9UJW2 476 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 WSB1Q9Y6I7 421 aa10.88□□□□□ -0.67
SHMT1-205ENST00000395684 HSPB1P04792 205 aaKnown RBP10.87□□□□□ -0.67
SHMT1-205ENST00000395684 CEACAM1P13688 526 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 BAXQ07812 192 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 Q0VFX4 171 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 FOXO1Q12778 655 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 C20orf204Q6ZNR8 217 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 P4HA3Q7Z4N8 544 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 CLDN23Q96B33 292 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 TOLLIPQ9H0E2 274 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 CALHM2Q9HA72 323 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 DEPPQ9NTK1 212 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 A0A087WWC5 75 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 H3BP45 60 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 PGLYRP1O75594 196 aaPredicted RBP10.87□□□□□ -0.67
SHMT1-205ENST00000395684 AKR1C8PQ5T2L2 129 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 C9orf135Q5VTT2 229 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 PCSK4Q6UW60 755 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 CMTM1Q8IZ96 169 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF295-AS1Q8N0V1 137 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 DOK5Q9P104 306 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 ATP23Q9Y6H3 246 aa10.87□□□□□ -0.67
SHMT1-205ENST00000395684 A0A096LPE4 126 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 TGIF2-C20orf24A0A0A6YYL0 155 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 DUXBA0A1W2PPF3 345 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 A0A1W2PPZ6 126 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 C3orf80F5H4A9 247 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 CYTIPO60759 359 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms