RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 HES5Q5TA89 166 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 MINOS1Q5TGZ0 78 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF626Q68DY1 528 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 ZNRF1Q8ND25 227 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 SELENOIQ9C0D9 397 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 METTL8Q9H825 291 aaKnown RBP5.73□□□□□ -1.49
LIMA1-202ENST00000394943 DNAJB11Q9UBS4 358 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF580Q9UK33 172 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 JPT1Q9UK76 154 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 MINOS1-NBL1R4GNA1 71 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 V9GYH0 126 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 TACC2O95359 2948 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 A0A0G2JMP0 313 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 A0A0X1KG70 313 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 C3orf80F5H4A9 247 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 CSTBP04080 98 aaKnown RBP5.73□□□□□ -1.49
LIMA1-202ENST00000394943 IGHV1-8P0DP01 117 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 SLC2A2P11168 524 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-202ENST00000394943 SERPINA2P20848 420 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF660Q6AZW8 331 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-202ENST00000394943 OR4M2Q8NGB6 313 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 OR4A4PQ8NGN8 299 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 GPER1Q99527 375 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 AK3Q9UIJ7 227 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 TRBV6-7A0A0A0MS04 114 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 METTL21EPA6NDL7 271 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 CRTAPO75718 401 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-202ENST00000394943 EIF4EP06730 217 aaKnown RBP5.73□□□□□ -1.49
LIMA1-202ENST00000394943 FCGR3AP08637 254 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF728P0DKX0 622 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 SNRPBP14678 240 aaKnown RBP5.73□□□□□ -1.49
LIMA1-202ENST00000394943 RPL15P61313 204 aaKnown RBP5.73□□□□□ -1.49
LIMA1-202ENST00000394943 GUCA2AQ02747 115 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF816Q0VGE8 651 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF273Q14593 569 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 OR52W1Q6IF63 320 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 OR5D18Q8NGL1 313 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 OR6Q1Q8NGQ2 317 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 ZFAND2BQ8WV99 257 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 DYRK2Q92630 601 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 GAL3ST2Q9H3Q3 398 aa5.73□□□□□ -1.49
LIMA1-202ENST00000394943 hCG_1807616A0A1W2PRN6 198 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 TMPRSS2O15393 492 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 AVPP01185 164 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 SELLP14151 372 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF16P17020 682 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-202ENST00000394943 CEBPDP49716 269 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-202ENST00000394943 SLC22A6Q4U2R8 563 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 FGFRL1Q8N441 504 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 OR10K1Q8NGX5 313 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 IDI2-AS1Q9NZ38 188 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 PTTG2Q9NZH5 202 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 DAPK2Q9UIK4 370 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 LOC100506127A0A0U1RQW1 187 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 MCRIP1C9JLW8 97 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 CRLF1O75462 422 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 ELK1P19419 428 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 TBPP20226 339 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 SOX6P35712 828 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 HLA-DRB3P79483 266 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 GRK1Q15835 563 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 PLA1AQ53H76 456 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 KRBOX4Q5JUW0 171 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 SFRP4Q6FHJ7 346 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-202ENST00000394943 DHRS11Q6UWP2 260 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 SLC25A48Q6ZT89 311 aaKnown RBP5.72□□□□□ -1.49
LIMA1-202ENST00000394943 Q6ZTK2 550 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 THNSL2Q86YJ6 484 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 ODF3L1Q8IXM7 274 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-202ENST00000394943 ARHGAP5-AS1Q96IT6 56 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 ZNF714Q96N38 554 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 S100A13Q99584 98 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 KCNK15Q9H427 330 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 AKIP1Q9NQ31 210 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 C12orf4Q9NQ89 552 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 MMP26Q9NRE1 261 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 FAM212BQ9NTI7 297 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-202ENST00000394943 GFOD1Q9NXC2 390 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 NBASA2RRP1 2371 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 CENPVL3A0A0U1RRI6 287 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 RNASEK-C17orf49H0YIS7 233 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 H3BSH0 61 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 CDK2P24941 298 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 FPR2P25090 351 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 RBMXP38159 391 aaKnown RBP5.72□□□□□ -1.49
LIMA1-202ENST00000394943 TAS2R20P59543 309 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 ERVFRD-1P60508 538 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 VAX1Q5SQQ9 334 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 LIAT1Q6ZQX7 453 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 OR13A1Q8NGR1 328 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 RAB3CQ96E17 227 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 KIRREL1Q96J84 757 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 PCGF1Q9BSM1 259 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 BANF2Q9H503 90 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 SLC2A8Q9NY64 477 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 PCDHB10Q9UN67 800 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 PEX16Q9Y5Y5 336 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 ANK2Q01484 3957 aa5.72□□□□□ -1.49
LIMA1-202ENST00000394943 PKDREJQ9NTG1 2253 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms