RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 NKG7Q16617 165 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 RRN3P1Q2M238 152 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 C19orf54Q5BKX5 351 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 NTMQ9P121 344 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 FAM157CP0CG43 387 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 OR10J1P30954 320 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 TCL1AP56279 114 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 ADIPOQQ15848 244 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 TEPPQ6URK8 271 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 TEX29Q8N6K0 151 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 PTPMT1Q8WUK0 201 aaPredicted RBP11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 MBD1Q9UIS9 605 aaPredicted RBP11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 HIGD1AQ9Y241 93 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 ZFP30Q9Y2G7 519 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 R4GN57 208 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 OR4C46A6NHA9 309 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 PRSS41Q7RTY9 318 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 C1orf174Q8IYL3 243 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 GHITMQ9H3K2 345 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 SLC6A13Q9NSD5 602 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 COL22A1Q8NFW1 1626 aaPredicted RBP11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 IGKV3-7A0A075B6H7 116 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 A0A1B0GTL3 188 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 ASPDHA6ND91 283 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 GEMIN2O14893 280 aaKnown RBP11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 INSL4Q14641 139 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 GAPTQ8N292 157 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 LINC01555Q8NAE3 123 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 RNF122Q9H9V4 155 aa11.26□□□□□ -0.61
CCDC88C-204ENST00000389857 LIPT2A6NK58 231 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 TWIST1Q15672 202 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 SH2D5Q6ZV89 423 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 OR2Y1Q8NGV0 311 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 VSTM2LQ96N03 204 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 TMEM204Q9BSN7 226 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 SIRT5Q9NXA8 310 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 FAM74A7A6NL05 159 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 MAGEA5P43359 124 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 ECSCRQ19T08 205 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 OR2D3Q8NGH3 330 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 MARVELD1Q9BSK0 173 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 ZNF256Q9Y2P7 627 aaPredicted RBP11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 SCGB1A1P11684 91 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 DLK1P80370 383 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 INO80CQ6PI98 192 aaPredicted RBP11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 WFDC3Q8IUB2 231 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 SSMEM1Q8WWF3 244 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 TMEM238LA0A1B0GVL6 79 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 A6NJY4 79 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 GCGP01275 180 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 PATE4P0C8F1 98 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 VDAC1P21796 283 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 IGFBP6P24592 240 aaPredicted RBP11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 B2MP61769 119 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 MUC15Q8N387 334 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 RAB37Q96AX2 223 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 OR51B2Q9Y5P1 312 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 SYNGR1O43759 233 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 SS18L1O75177 396 aaPredicted RBP11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 CISD3P0C7P0 127 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 SUCLG1P53597 346 aaKnown RBP11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 TMEM255AQ5JRV8 349 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 EBLN2Q6P2I7 272 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 ZNF841Q6ZN19 808 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 FADS6Q8N9I5 356 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 OR2H1Q9GZK4 316 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 AGFG2O95081 481 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 COPS9Q8WXC6 57 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 SERGEFQ9UGK8 458 aa11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 MRM2Q9UI43 246 aaKnown RBP11.25□□□□□ -0.61
CCDC88C-204ENST00000389857 METAP1P53582 386 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 HSD17B13Q7Z5P4 300 aaPredicted RBP11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 HMGCLL1Q8TB92 370 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 FAM222BQ8WU58 562 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 OR2W1Q9Y3N9 320 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 TRBV23-1A0A0A0MS06 115 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 PPYP01298 95 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 UQCRFS1P47985 274 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 AWAT1Q58HT5 328 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 CLEC18BQ6UXF7 455 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 MRGPRGQ86SM5 289 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 DYRK2Q92630 601 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 STARD4Q96DR4 205 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 CCDC88CQ9P219 2028 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 SCN7AQ01118 1682 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 A0A1B0GTH9 108 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 RASL10BQ96S79 203 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 CDIPTO14735 213 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 CEBPDP49716 269 aaPredicted RBP11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 SLC25A10Q9UBX3 287 aaPredicted RBP11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 NEU3Q9UQ49 428 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 NINQ8N4C6 2090 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 CA11O75493 328 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 EML2O95834 649 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 RPLP1P05386 114 aaKnown RBP11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 HMGA2P52926 109 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 ROM1Q03395 351 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 XAF1Q6GPH4 301 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 PRNTQ86SH4 94 aa11.24□□□□□ -0.61
CCDC88C-204ENST00000389857 TMEM171Q8WVE6 324 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms