RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SH3BGRL3Q9H299 93 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 OR51I2Q9H344 312 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 CCL28Q9NRJ3 127 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 ZNF14P17017 642 aaPredicted RBP11.39□□□□□ -0.59
CCDC3-202ENST00000378839 FHITP49789 147 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 SULT1A2P50226 295 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 PJVKQ0ZLH3 352 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 ODF3L1Q8IXM7 274 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 LGI3Q8N145 548 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 ARL11Q969Q4 196 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 BCL2L14Q9BZR8 327 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 TMEM222Q9H0R3 208 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 ARV1Q9H2C2 271 aa11.39□□□□□ -0.59
CCDC3-202ENST00000378839 HSD17B6O14756 317 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 TNFSF12O43508 249 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 APLNRP35414 380 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 CLINT1Q14677 625 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 SELENOHQ8IZQ5 122 aaKnown RBP11.38□□□□□ -0.59
CCDC3-202ENST00000378839 SUMF1Q8NBK3 374 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 RHOFQ9HBH0 211 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 TREM1Q9NP99 234 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 PARD6AQ9NPB6 346 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 MED19A0JLT2 244 aaPredicted RBP11.38□□□□□ -0.59
CCDC3-202ENST00000378839 FAM157AC9JC47 383 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 OR8U9P0C7N5 309 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 IGHV1-2P23083 117 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 TNFSF10P50591 281 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 PLP2Q04941 152 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 DPPA2Q7Z7J5 298 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 OR8U1Q8NH10 309 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 UQCC1Q9NVA1 299 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 TRDCB7Z8K6 153 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 E5RGE8 158 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 EIF3GO75821 320 aaKnown RBP eCLIP11.38□□□□□ -0.59
CCDC3-202ENST00000378839 LY86O95711 162 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 GAPDHP04406 335 aaKnown RBP11.38□□□□□ -0.59
CCDC3-202ENST00000378839 RAB13P51153 203 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 BLOC1S1P78537 153 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 MPV17LQ2QL34 196 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 Q6P435 159 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 ETV3LQ6ZN32 361 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 MKXQ8IYA7 352 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 PLPPR1Q8TBJ4 325 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 NSG2Q9Y328 171 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 ATP23Q9Y6H3 246 aa11.38□□□□□ -0.59
CCDC3-202ENST00000378839 C1QL1O75973 258 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 FABP1P07148 127 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 NPBWR1P48145 328 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 SMCO1Q147U7 214 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 SRSF7Q16629 238 aaKnown RBP eCLIP11.37□□□□□ -0.59
CCDC3-202ENST00000378839 CXorf66Q5JRM2 361 aaPredicted RBP11.37□□□□□ -0.59
CCDC3-202ENST00000378839 FBXW12Q6X9E4 464 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 FDCSPQ8NFU4 85 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 TMEM56Q96MV1 263 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 IP6K3Q96PC2 410 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 SYT3Q9BQG1 590 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 TMEM56-RWDD3S4R434 201 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 TTC28Q96AY4 2481 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 NBEAQ8NFP9 2946 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 SPAARA0A1B0GVQ0 90 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 LYZL6O75951 148 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 NXPH3O95157 252 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 TMEM50AO95807 157 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 CAV2P51636 162 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 SPIN3Q5JUX0 258 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 CCDC36Q8IYA8 594 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 UBAC2Q8NBM4 344 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 NEK7Q8TDX7 302 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 SAT2Q96F10 170 aaPredicted RBP11.37□□□□□ -0.59
CCDC3-202ENST00000378839 POM121Q96HA1 1249 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 OR2J1Q9GZK6 312 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 DLL3Q9NYJ7 618 aa11.37□□□□□ -0.59
CCDC3-202ENST00000378839 SMG1Q96Q15 3661 aaKnown RBP11.37□□□□□ -0.59
CCDC3-202ENST00000378839 ANKRD30BLA7E2S9 258 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 IGLV2-14P01704 120 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 CRYBA1P05813 215 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 SOX8P57073 446 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 IL24Q13007 206 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 C9orf152Q5JTZ5 239 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 ZNF324BQ6AW86 544 aaPredicted RBP11.36□□□□□ -0.59
CCDC3-202ENST00000378839 PIP4P1Q86T03 277 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 FAM58AQ8N1B3 248 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 UBALD1Q8TB05 177 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 SCRT1Q9BWW7 348 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 MAGT1Q9H0U3 335 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 PLEKHA2Q9HB19 425 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 OR1A1Q9P1Q5 309 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 CARHSP1Q9Y2V2 147 aaKnown RBP11.36□□□□□ -0.59
CCDC3-202ENST00000378839 PRR14LQ5THK1 2151 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 A0A0G2JRQ6 117 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 H0YL77 283 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 SLC33A1O00400 549 aaPredicted RBP11.36□□□□□ -0.59
CCDC3-202ENST00000378839 SMPD2O60906 423 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 JTBO76095 146 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 TK1P04183 234 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 CCL11P51671 97 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 GNG3P63215 75 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 ZNF880Q6PDB4 577 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 IL34Q6ZMJ4 242 aa11.36□□□□□ -0.59
CCDC3-202ENST00000378839 Q6ZRG5 221 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms