RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 SLC22A25Q6T423 547 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 SKA3Q8IX90 412 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 SPAG16Q8N0X2 631 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 POC1AQ8NBT0 407 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 SPSB1Q96BD6 273 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 SAT2Q96F10 170 aaPredicted RBP10.54□□□□□ -0.72
VRK3-202ENST00000377011 NARS2Q96I59 477 aaKnown RBP10.54□□□□□ -0.72
VRK3-202ENST00000377011 LYZL4Q96KX0 146 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 SPACA5Q96QH8 159 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 S100A13Q99584 98 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 SMR3AQ99954 134 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 ULBP2Q9BZM5 246 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 MMP26Q9NRE1 261 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 CYTL1Q9NRR1 136 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 AMDHD2Q9Y303 409 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 CSPG4Q6UVK1 2322 aa10.54□□□□□ -0.72
VRK3-202ENST00000377011 NUPL2O15504 423 aaKnown RBP10.53□□□□□ -0.72
VRK3-202ENST00000377011 PLATP00750 562 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 IGLV1-44P01699 117 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 RPS2P15880 293 aaKnown RBP10.53□□□□□ -0.72
VRK3-202ENST00000377011 IDH3GP51553 393 aaPredicted RBP10.53□□□□□ -0.72
VRK3-202ENST00000377011 SUPT4H1P63272 117 aaKnown RBP10.53□□□□□ -0.72
VRK3-202ENST00000377011 NKAPLQ5M9Q1 402 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 TMEM108Q6UXF1 575 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 RNF144BQ7Z419 303 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 LINC00518Q8N0U6 118 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 ZSCAN4Q8NAM6 433 aaPredicted RBP10.53□□□□□ -0.72
VRK3-202ENST00000377011 CSNK2A3Q8NEV1 391 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 OR1S2Q8NGQ3 325 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 FOXB1Q99853 325 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 USB1Q9BQ65 265 aaKnown RBP10.53□□□□□ -0.72
VRK3-202ENST00000377011 SOX7Q9BT81 388 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 DECR2Q9NUI1 292 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 ZNF391Q9UJN7 358 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 C14orf166Q9Y224 244 aaKnown RBP10.53□□□□□ -0.72
VRK3-202ENST00000377011 OVOL3O00110 214 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 SNAPINO95295 136 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 IGKV3-15P01624 115 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 PTAFRP25105 342 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 BLVRBP30043 206 aaPredicted RBP10.53□□□□□ -0.72
VRK3-202ENST00000377011 NKX6-1P78426 367 aaPredicted RBP10.53□□□□□ -0.72
VRK3-202ENST00000377011 HGFACQ04756 655 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 SCRN3Q0VDG4 424 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 CHRFAM7AQ494W8 412 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 FAM27BQ5VT28 67 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 DHRS7BQ6IAN0 325 aaPredicted RBP10.53□□□□□ -0.72
VRK3-202ENST00000377011 C20orf204Q6ZNR8 217 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 TMUB1Q9BVT8 246 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 SEC11CQ9BY50 192 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 NGBQ9NPG2 151 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 C1orf123Q9NWV4 160 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 EHFQ9NZC4 300 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 HSF4Q9ULV5 492 aa10.53□□□□□ -0.72
VRK3-202ENST00000377011 FAM74A7A6NL05 159 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 H0YIZ8 118 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 M0R135 149 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 SMPD2O60906 423 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 CSTBP04080 98 aaKnown RBP10.52□□□□□ -0.73
VRK3-202ENST00000377011 CTSDP07339 412 aaPredicted RBP10.52□□□□□ -0.73
VRK3-202ENST00000377011 DTYMKP23919 212 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 HOXA1P49639 335 aaPredicted RBP10.52□□□□□ -0.73
VRK3-202ENST00000377011 UBE2NP61088 152 aaKnown RBP10.52□□□□□ -0.73
VRK3-202ENST00000377011 RAB35Q15286 201 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 UBE2V2Q15819 145 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 MST1LQ2TV78 715 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 ANKRD55Q3KP44 614 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 FAM74A3Q4VXF1 159 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 Q5PR19 223 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 C11orf71Q6IPW1 123 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 RTN4RL2Q86UN3 420 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 TGIF2LYQ8IUE0 185 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 ZNF799Q96GE5 643 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 POM121Q96HA1 1249 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 Q96M66 194 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 GSX1Q9H4S2 264 aaPredicted RBP10.52□□□□□ -0.73
VRK3-202ENST00000377011 TMEM38BQ9NVV0 291 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 BEX4Q9NWD9 120 aaPredicted RBP10.52□□□□□ -0.73
VRK3-202ENST00000377011 ATP23Q9Y6H3 246 aa10.52□□□□□ -0.73
VRK3-202ENST00000377011 NSD1Q96L73 2696 aaPredicted RBP10.52□□□□□ -0.73
VRK3-202ENST00000377011 A0A1W2PP11 408 aa10.51□□□□□ -0.73
VRK3-202ENST00000377011 LY6HO94772 140 aa10.51□□□□□ -0.73
VRK3-202ENST00000377011 IFNA2P01563 188 aa10.51□□□□□ -0.73
VRK3-202ENST00000377011 CST2P09228 141 aa10.51□□□□□ -0.73
VRK3-202ENST00000377011 CCL2P13500 99 aa10.51□□□□□ -0.73
VRK3-202ENST00000377011 CNN3Q15417 329 aaKnown RBP10.51□□□□□ -0.73
VRK3-202ENST00000377011 SLC9A3R2Q15599 337 aa10.51□□□□□ -0.73
VRK3-202ENST00000377011 HAGHLQ6PII5 290 aaPredicted RBP10.51□□□□□ -0.73
VRK3-202ENST00000377011 UNQ6126/PRO20091Q6UXV3 157 aa10.51□□□□□ -0.73
VRK3-202ENST00000377011 RRNAD1Q96FB5 475 aaKnown RBP10.51□□□□□ -0.73
VRK3-202ENST00000377011 SLC5A7Q9GZV3 580 aa10.51□□□□□ -0.73
VRK3-202ENST00000377011 METTL8Q9H825 291 aaKnown RBP10.51□□□□□ -0.73
VRK3-202ENST00000377011 ZNF701Q9NV72 531 aaPredicted RBP10.51□□□□□ -0.73
VRK3-202ENST00000377011 PIGLQ9Y2B2 252 aa10.51□□□□□ -0.73
VRK3-202ENST00000377011 POMT1Q9Y6A1 747 aa10.51□□□□□ -0.73
VRK3-202ENST00000377011 F5H5K5 113 aa10.5□□□□□ -0.73
VRK3-202ENST00000377011 IGHV4-39P01824 125 aa10.5□□□□□ -0.73
VRK3-202ENST00000377011 GAPDHP04406 335 aaKnown RBP10.5□□□□□ -0.73
VRK3-202ENST00000377011 HEXAP06865 529 aa10.5□□□□□ -0.73
VRK3-202ENST00000377011 CBR1P16152 277 aa10.5□□□□□ -0.73
VRK3-202ENST00000377011 ZNF14P17017 642 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms