RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 C3AR1Q16581 482 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 ACER2Q5QJU3 275 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 CMTM1Q8IZ96 169 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 SELENOHQ8IZQ5 122 aaKnown RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 IL22RA1Q8N6P7 574 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 CPT1CQ8TCG5 803 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 PLEKHF2Q9H8W4 249 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 DEPPQ9NTK1 212 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 FAM166BA8MTA8 275 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 FOXL2NBQ6ZUU3 175 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 GGNQ86UU5 652 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 OR2Y1Q8NGV0 311 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 OR2V1Q8NHB1 315 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 SGCZQ96LD1 299 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 ARV1Q9H2C2 271 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 MED12LQ86YW9 2145 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 A0A1W2PR80 420 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 AP4M1O00189 453 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 UBE2CO00762 179 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 IFNA17P01571 189 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 CELA3AP09093 270 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF429Q86V71 674 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 RSG1Q9BU20 258 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 HES7Q9BYE0 225 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 FAM86C1Q9NVL1 165 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 DSPP15924 2871 aaKnown RBP10.42□□□□□ -0.74
CLIP3-201ENST00000360535 RP1L1Q8IWN7 2480 aaPredicted RBP10.42□□□□□ -0.74
CLIP3-201ENST00000360535 TRAPPC2LH3BP13 241 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 S100A8P05109 93 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 FOLR2P14207 255 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 RPS16P62249 146 aaKnown RBP10.42□□□□□ -0.74
CLIP3-201ENST00000360535 RAB11AP62491 216 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 DLK1P80370 383 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 MPV17LQ2QL34 196 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF100Q8IYN0 542 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 PPP1R3CQ9UQK1 317 aa10.42□□□□□ -0.74
CLIP3-201ENST00000360535 USF3Q68DE3 2245 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 TGIF2-C20orf24A0A0A6YYL0 155 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 SLC22A20A6NK97 555 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 HMGB3O15347 200 aaKnown RBP10.41□□□□□ -0.74
CLIP3-201ENST00000360535 RAB5CP51148 216 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 B3GALT5-AS1P59052 145 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 RNF212Q495C1 297 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 C9orf152Q5JTZ5 239 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 TMEM211Q6ICI0 200 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 WDR5BQ86VZ2 330 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 LURAP1LQ8IV03 231 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 COMMD1Q8N668 190 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 HIST1H2AAQ96QV6 131 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF251Q9BRH9 671 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 SLC25A31Q9H0C2 315 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 ERRFI1Q9UJM3 462 aaPredicted RBP10.41□□□□□ -0.74
CLIP3-201ENST00000360535 WSB1Q9Y6I7 421 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 KIAA1549Q9HCM3 1950 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 ASPMQ8IZT6 3477 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 ARGFXA6NJG6 315 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 RPL36A-HNRNPH2H7BZ11 118 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 CYB5BO43169 146 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 SERPINE2P07093 398 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 FGF5P12034 268 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 SRD5A2P31213 254 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 PCBD1P61457 104 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 HERPUD1Q15011 391 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 TUSC5Q8IXB3 177 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 OR1K1Q8NGR3 316 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 SPIN2AQ99865 258 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 SPIN2BQ9BPZ2 258 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 EGLN1Q9GZT9 426 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF552Q9H707 407 aaPredicted RBP10.41□□□□□ -0.74
CLIP3-201ENST00000360535 MTCH1Q9NZJ7 389 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 KCNS2Q9ULS6 477 aa10.41□□□□□ -0.74
CLIP3-201ENST00000360535 LOC102723996A0A087X1L8 192 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 A0A0G2JRQ6 117 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 SMIM6P0DI80 62 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 STARD6P59095 220 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 Q0VFX4 171 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 IL11RAQ14626 422 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 RHEBQ15382 184 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 CLEC12BQ2HXU8 276 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 SPSB3Q6PJ21 355 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 C20orf204Q6ZNR8 217 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 MKXQ8IYA7 352 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 LRTM2Q8N967 370 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 WDR54Q9H977 334 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 LILRA1O75019 489 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 CXCL1P09341 107 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 METTL15P1P0C7V9 234 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 PSG2P11465 335 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 EIF2S3P41091 472 aaKnown RBP10.4□□□□□ -0.74
CLIP3-201ENST00000360535 TMEM42Q69YG0 159 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 M1APQ8TC57 530 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 SF3B5Q9BWJ5 86 aaKnown RBP10.4□□□□□ -0.74
CLIP3-201ENST00000360535 FGF23Q9GZV9 251 aaPredicted RBP10.4□□□□□ -0.74
CLIP3-201ENST00000360535 C12orf49Q9H741 205 aa10.4□□□□□ -0.74
CLIP3-201ENST00000360535 CDS2O95674 445 aa10.4□□□□□ -0.75
CLIP3-201ENST00000360535 PDGFBP01127 241 aaPredicted RBP10.4□□□□□ -0.75
CLIP3-201ENST00000360535 HOXB1P14653 301 aaPredicted RBP10.4□□□□□ -0.75
CLIP3-201ENST00000360535 ELLP55199 621 aaPredicted RBP10.4□□□□□ -0.75
CLIP3-201ENST00000360535 CDPF1Q6NVV7 123 aa10.4□□□□□ -0.75
CLIP3-201ENST00000360535 PSMF1Q92530 271 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms