RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 MRPL54Q6P161 138 aaKnown RBP9□□□□□ -0.97
CLIP1-202ENST00000358808 FAHD1Q6P587 224 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 OR2D3Q8NGH3 330 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 OR13C6PQ8NH95 151 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 IFITM10A6NMD0 228 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 ZAR1LA6NP61 321 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 ZNF253O75346 499 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 BPIFA4PQ86YQ2 179 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 RTN4RQ9BZR6 473 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 MANBALQ9NQG1 85 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 HIGD1AQ9Y241 93 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 CGB1A6NKQ9 187 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 AP4M1O00189 453 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 SLC17A2O00624 439 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 CST2P09228 141 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 NMUP48645 174 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 LINC00303Q3SY05 128 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 UNQ9370/PRO34162Q6UXP9 181 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 GPBAR1Q8TDU6 330 aa9□□□□□ -0.97
CLIP1-202ENST00000358808 TCRBV5S1A1TA0A578 114 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 SRD5A2P31213 254 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 RNF165Q6ZSG1 346 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 OR4B1Q8NGF8 309 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 ASB13Q8WXK3 278 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 PIMREGQ9BSJ6 248 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 PDFQ9HBH1 243 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 RAXQ9Y2V3 346 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 ARFGEF1Q9Y6D6 1849 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 SFT2D2O95562 160 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 OR5AC1P0C628 307 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 MAGEA5P43359 124 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 PGFP49763 221 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 DYNLT3P51808 116 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 SLC23A3Q6PIS1 610 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 NUDT10Q8NFP7 164 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 NUDT11Q96G61 164 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 MBD1Q9UIS9 605 aaPredicted RBP8.99□□□□□ -0.97
CLIP1-202ENST00000358808 TMEM238LA0A1B0GVL6 79 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 A6NJY4 79 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 IGFBP6P24592 240 aaPredicted RBP8.99□□□□□ -0.97
CLIP1-202ENST00000358808 CLDN20P56880 219 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 TMEM78Q5T7P6 136 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 OR4D9Q8NGE8 314 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 OR52M1Q8NGK5 317 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 PTP4A1Q93096 173 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 HILPDAQ9Y5L2 63 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 A0A1W2PS18 150 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 C16orf97H3BN30 126 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 PYCARD-AS1I3L0S3 204 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 PDCD6O75340 191 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 SRSF10O75494 262 aaKnown RBP8.99□□□□□ -0.97
CLIP1-202ENST00000358808 FAM157CP0CG43 387 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 REG1BP48304 166 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 EMP1P54849 157 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 UCNP55089 124 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 GCSAMLQ5JQS6 135 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 BVESQ8NE79 360 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 ZNF707Q96C28 371 aaPredicted RBP8.99□□□□□ -0.97
CLIP1-202ENST00000358808 MMP26Q9NRE1 261 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 MPC1Q9Y5U8 109 aa8.99□□□□□ -0.97
CLIP1-202ENST00000358808 GEMIN2O14893 280 aaKnown RBP8.98□□□□□ -0.97
CLIP1-202ENST00000358808 WNT9BO14905 357 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 LMX1BO60663 402 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 OR10G8Q8NGN5 311 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 SGMS2Q8NHU3 365 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 PRNDQ9UKY0 176 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 A0A1B0GU03 582 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 COL5A1-AS1Q5SY13 56 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 LHX9Q9NQ69 397 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 GPR27Q9NS67 375 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 PGPEP1Q9NXJ5 209 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 NTMQ9P121 344 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 NAT8Q9UHE5 227 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 SF3B6Q9Y3B4 125 aaKnown RBP8.98□□□□□ -0.97
CLIP1-202ENST00000358808 SPAARA0A1B0GVQ0 90 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 C11orf94C9JXX5 98 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 PLAUP00749 431 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 APCSP02743 223 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 HINT1P49773 126 aaPredicted RBP8.98□□□□□ -0.97
CLIP1-202ENST00000358808 CLLU1Q5K131 121 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 LRRC75AQ8NAA5 344 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 CHRNA10Q9GZZ6 450 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 Q9N2K0 584 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 SLC25A10Q9UBX3 287 aaPredicted RBP8.98□□□□□ -0.97
CLIP1-202ENST00000358808 CCL27Q9Y4X3 112 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 CDK5RAP2Q96SN8 1893 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 FFAR1O14842 300 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 ZNF735P0CB33 412 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 FAM106CPP0CH98 169 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 PMELP40967 661 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 OR4A47Q6IF82 309 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 ZDHHC22Q8N966 263 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 BCL2L10Q9HD36 194 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 LOC107984156A0A0G2JMH3 177 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 PRSS2P07478 247 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 WDR38Q5JTN6 314 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 ARL17AQ8IVW1 177 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 STXBP6Q8NFX7 210 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 RPS4Y2Q8TD47 263 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 COPS9Q8WXC6 57 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms